FC921493

Overview
NameFC921493
Unique NameFC921493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_ECOHS (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O9:H4 (strain HS) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_ECO57 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O157:H7 GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_ECO24 (ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_CLONN (ATP-dependent Clp protease proteolytic subunit OS=Clostridium novyi (strain NT) GN=clpP PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 77/120 (64.17%), Postives = 98/120 (81.67%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSI 651
            D  + LL+ RIIFLG +V+D+TA  +++QLLFL+AED  KDI L+INSPGGS+TAGM IYD M+  K DVSTIC+G+AASMGAFLL AG+KGKR+ +PN+ +MIHQPLG   G+ATD+ I
Sbjct:   19 DIYSRLLKDRIIFLGEEVNDVTASLVVAQLLFLEAEDPDKDIYLYINSPGGSITAGMAIYDTMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGI 138          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP3_ANAVT (ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP3 PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 80/125 (64.00%), Postives = 102/125 (81.60%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LLR+RIIFLG+ +DD  A+ I++QLLFLDAEDS+KDI+L+INSPGGSV AGM IYD ++  + DV TIC GLAASMGAFLL AG+KGKR  +P++R+MIHQPLG A G+A D+ I+ RE+
Sbjct:   27 DIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREI 151          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP2_ANASP (ATP-dependent Clp protease proteolytic subunit 2 OS=Anabaena sp. (strain PCC 7120) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 80/125 (64.00%), Postives = 102/125 (81.60%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LLR+RIIFLG+ +DD  A+ I++QLLFLDAEDS+KDI+L+INSPGGSV AGM IYD ++  + DV TIC GLAASMGAFLL AG+KGKR  +P++R+MIHQPLG A G+A D+ I+ RE+
Sbjct:   45 DIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIYDTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEIQAREI 169          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_BACP2 (ATP-dependent Clp protease proteolytic subunit OS=Bacillus pumilus (strain SAFR-032) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.342e-39
Identity = 79/125 (63.20%), Postives = 99/125 (79.20%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII LGS +DD  A+ I+SQLLFL+AED +KDI ++INSPGGS+TAGM IYD M+  K  VSTIC+G+AASMGAFLLAAG KGKRY +PN+ VMIHQPLG A G+AT++ I  + +
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_BACA2 (ATP-dependent Clp protease proteolytic subunit OS=Bacillus amyloliquefaciens (strain FZB42) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.342e-39
Identity = 79/125 (63.20%), Postives = 99/125 (79.20%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII LGS +DD  A+ I+SQLLFL+AED +KDI ++INSPGGS+TAGM IYD M+  K  VSTIC+G+AASMGAFLLAAG KGKRY +PN+ VMIHQPLG A G+AT++ I  + +
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPK (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain KT2440) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 78/125 (62.40%), Postives = 100/125 (80.00%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL   V+D  A+ +++QLLFL+AE+  KDI L+INSPGGSVTAGM IYD M+  K DVSTIC+G A SMGAFLLAAG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  +E+
Sbjct:   35 DIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEI 159          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_PSEP1 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 78/125 (62.40%), Postives = 100/125 (80.00%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL   V+D  A+ +++QLLFL+AE+  KDI L+INSPGGSVTAGM IYD M+  K DVSTIC+G A SMGAFLLAAG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  +E+
Sbjct:   35 DIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEI 159          
The following BLAST results are available for this feature:
BLAST of FC921493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_ECOHS1.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECO571.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ECO241.027e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLONN1.027e-3964.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_ANAVT1.027e-3964.00ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_ANASP1.027e-3964.00ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_BACP21.342e-3963.20ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACA21.342e-3963.20ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEPK1.752e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEP11.752e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32105F02EF RVDevelopN Citrus clementina cDNA clone C32105F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921493 ID=FC921493; Name=FC921493; organism=Citrus clementina; type=EST; length=667bp
GAAACCACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGAC
AGCATCTTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGA
AAACCCACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATC
AAAACGAGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAAT
AGCACAGACCTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATA
ATAATACTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACT
AACATGCTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGA
CTTGACTGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAG
ATTCTAAAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTT
ACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGT
TTCAACTATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAG
CAGCTGGTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATG
ATCCATCAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCAT
ACGGATTAGAGAGATGT
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