FC921493

Overview
NameFC921493
Unique NameFC921493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP1_LEIXX (ATP-dependent Clp protease proteolytic subunit 1 OS=Leifsonia xyli subsp. xyli GN=clpP1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.030e-31
Identity = 68/113 (60.18%), Postives = 87/113 (76.99%), Query Frame = 1
Query:  307 LLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDM 645
            LL+ RII+LGS+V D  A+ I ++LL L AEDSK+DI L+INSPGGS+TAGM IYD M+    D+ T+ +G+AASMG  LL AG+KGKRY  PNARV++HQP G  GG A+D+
Sbjct:   14 LLKDRIIWLGSEVRDENANEIAAKLLLLAAEDSKRDIYLYINSPGGSITAGMAIYDTMQFVPNDIVTVGIGMAASMGQLLLTAGTKGKRYITPNARVLLHQPHGGFGGTASDI 126          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_LACBA (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=clpP PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.345e-31
Identity = 67/125 (53.60%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII L   ++D  A+ II+QLLFLDA+DS KDI L+INSPGG V++G+ IYD M   ++DV TI LG+AASM + L ++G+KGKR+ +P+A+VMIHQP G A G+ T++ I  RE+
Sbjct:   19 DIYSRLLKDRIIMLSGPIEDDMANAIIAQLLFLDAQDSTKDISLYINSPGGVVSSGLAIYDTMNFIQSDVQTITLGMAASMASVLASSGTKGKRFALPHAQVMIHQPSGGAQGQQTEIEIAAREI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_CAUCR (ATP-dependent Clp protease proteolytic subunit OS=Caulobacter crescentus GN=clpP PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.345e-31
Identity = 65/118 (55.08%), Postives = 91/118 (77.12%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDM 645
            D  + LL++RIIFL   V+D  A  I +QLLFL++E+ KK+I ++INSPGG VTAG+ IYD M+  K+ VST+C+G+AASMG+ LLAAG+ G+R  +PNAR+M+HQP G   G+A+D+
Sbjct:   27 DIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRISLPNARIMVHQPSGGFRGQASDI 144          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_CAUCN (ATP-dependent Clp protease proteolytic subunit OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=clpP PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.345e-31
Identity = 65/118 (55.08%), Postives = 91/118 (77.12%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDM 645
            D  + LL++RIIFL   V+D  A  I +QLLFL++E+ KK+I ++INSPGG VTAG+ IYD M+  K+ VST+C+G+AASMG+ LLAAG+ G+R  +PNAR+M+HQP G   G+A+D+
Sbjct:   27 DIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPKKEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRISLPNARIMVHQPSGGFRGQASDI 144          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_LACRJ (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus reuteri (strain JCM 1112) GN=clpP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII L   ++D  A+ I++QLLFLDA+DS KDI L+INSPGG VT+GM IYD M   KADV TI +G+AASM + L+++G+KGKR+ +P+++V+IHQP G A G+ T++ I   E+
Sbjct:   19 DIYSRLLKDRIIMLSGPIEDEMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKADVQTIVIGMAASMASVLVSSGAKGKRFGLPHSQVLIHQPSGGAQGQQTEIEIAATEI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_LACRD (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus reuteri (strain DSM 20016) GN=clpP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII L   ++D  A+ I++QLLFLDA+DS KDI L+INSPGG VT+GM IYD M   KADV TI +G+AASM + L+++G+KGKR+ +P+++V+IHQP G A G+ T++ I   E+
Sbjct:   19 DIYSRLLKDRIIMLSGPIEDEMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDTMNFIKADVQTIVIGMAASMASVLVSSGAKGKRFGLPHSQVLIHQPSGGAQGQQTEIEIAATEI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_LACPL (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus plantarum GN=clpP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 66/125 (52.80%), Postives = 91/125 (72.80%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII L   ++D  A+ II+QLLFLDA+DS KDI L+INSPGG VTAG+ IYD M   K+DV TI +G+AASM + L ++G+KGKR+ +PN+ ++IHQP G A G+ T++ I   E+
Sbjct:   19 DIYSRLLKDRIIMLSGPIEDNMANAIIAQLLFLDAQDSGKDIYLYINSPGGVVTAGLAIYDTMNFIKSDVQTIVMGMAASMASVLASSGTKGKRFALPNSEILIHQPSGGAQGQQTEIEIVAEEI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_LACCB (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus casei (strain BL23) GN=clpP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII L  +V+D  A+ +I+QLLFLDA+DS+KDI L+INSPGG +T+G+ + D M   K+DV TI +G+AASM + LLA G+KGKR+ +PN+ ++IHQP G A G+ T++ I   E+
Sbjct:   18 DIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYLYINSPGGVITSGLAMLDTMNFIKSDVQTIAIGMAASMASVLLAGGTKGKRFALPNSTILIHQPSGGAQGQQTEIEIAAEEI 142          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_LACC3 (ATP-dependent Clp protease proteolytic subunit OS=Lactobacillus casei (strain ATCC 334) GN=clpP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII L  +V+D  A+ +I+QLLFLDA+DS+KDI L+INSPGG +T+G+ + D M   K+DV TI +G+AASM + LLA G+KGKR+ +PN+ ++IHQP G A G+ T++ I   E+
Sbjct:   18 DIYSRLLKDRIIMLSGEVNDQMANSVIAQLLFLDAQDSEKDIYLYINSPGGVITSGLAMLDTMNFIKSDVQTIAIGMAASMASVLLAGGTKGKRFALPNSTILIHQPSGGAQGQQTEIEIAAEEI 142          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_BARQU (ATP-dependent Clp protease proteolytic subunit OS=Bartonella quintana GN=clpP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 64/118 (54.24%), Postives = 89/118 (75.42%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDM 645
            D  + LL++RIIF+   V+D  A  + +QLLFL+AE+ KK+I L+INSPGG VT+GM IYD M+  +  VST+C+G AASMG+ LL AG+KG R+ +PNAR+M+HQP G   G+A+D+
Sbjct:   27 DIFSRLLKERIIFINGPVEDSMAMLVCAQLLFLEAENPKKEISLYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMVHQPSGGFQGQASDI 144          
The following BLAST results are available for this feature:
BLAST of FC921493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP1_LEIXX1.030e-3160.18ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_LACBA1.345e-3153.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAUCR1.345e-3155.08ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAUCN1.345e-3155.08ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACRJ2.294e-3152.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACRD2.294e-3152.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACPL2.294e-3152.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACCB2.294e-3151.20ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LACC32.294e-3151.20ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BARQU2.294e-3154.24ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32105F02EF RVDevelopN Citrus clementina cDNA clone C32105F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921493 ID=FC921493; Name=FC921493; organism=Citrus clementina; type=EST; length=667bp
GAAACCACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGAC
AGCATCTTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGA
AAACCCACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATC
AAAACGAGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAAT
AGCACAGACCTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATA
ATAATACTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACT
AACATGCTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGA
CTTGACTGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAG
ATTCTAAAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTT
ACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGT
TTCAACTATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAG
CAGCTGGTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATG
ATCCATCAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCAT
ACGGATTAGAGAGATGT
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