FC921493

Overview
NameFC921493
Unique NameFC921493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_MACCJ (ATP-dependent Clp protease proteolytic subunit OS=Macrococcus caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 80/125 (64.00%), Postives = 100/125 (80.00%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII LGS +DD  A+ I+SQLLFL A+D++KDI L+INSPGGSVTAGM IYD M+  K DV TIC+G+AASMG+FLLAAG+KGKR+ +PNA VMIHQPLG A G+AT++ I  R +
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGMAIYDTMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAARHI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSW (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus sp. (strain WCH70) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 78/125 (62.40%), Postives = 100/125 (80.00%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII LGS +DD  A+ I+SQLLFL AED +KDI L+INSPGGS+TAG+ IYD M+  K DVSTIC+G+AASMGAFLLAAG+KGKR+ +PN+ +MIHQPLG A G+AT++ I  + +
Sbjct:   19 DIYSRLLKDRIIILGSPIDDQVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKRI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 80/125 (64.00%), Postives = 102/125 (81.60%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LLR RIIFLG+QVDD  A+ I++Q+L+L++ED +KDI L+INSPGGSV AGM IYD M+  + DVSTIC+GLAASMGAFLLA G+KGKR  +P+AR+MIHQPLG A G ATD+ I+ +E+
Sbjct:   17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEI 141          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJA (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 80/125 (64.00%), Postives = 102/125 (81.60%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LLR RIIFLG+QVDD  A+ I++Q+L+L++ED +KDI L+INSPGGSV AGM IYD M+  + DVSTIC+GLAASMGAFLLA G+KGKR  +P+AR+MIHQPLG A G ATD+ I+ +E+
Sbjct:   17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPATDIEIQAKEI 141          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP2_BURXL (ATP-dependent Clp protease proteolytic subunit 2 OS=Burkholderia xenovorans (strain LB400) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 76/125 (60.80%), Postives = 104/125 (83.20%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++RI+FL  +V+D TA+ +++Q+LFL++E+  KDI  +INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLAAG+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE+
Sbjct:   42 DIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDISFYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREI 166          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNY3 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 77/125 (61.60%), Postives = 103/125 (82.40%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LLR+RI+FLG +V D  A+ +++QLLFL+AED +KDI L+INSPGGSV+AG+GI+D M   + DV TIC+GLAASMGAFLL+AG+KGKR  +PN+R+MIHQPLG A G+ATD+ I+ +E+
Sbjct:   17 DIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYLYINSPGGSVSAGLGIFDTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLGGAQGQATDIEIQAKEI 141          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LLR+RIIFLG+ VDD  AD +++Q+LFL+AED +KDI+++INSPGGSVTAG+ IYD M+    DV TIC GLAASMGAFLL+ G+KGKR  +PNAR+MIHQPLG A G+A D+ I+ +E+
Sbjct:   24 DIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYINSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEI 148          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SODGM (ATP-dependent Clp protease proteolytic subunit OS=Sodalis glossinidius (strain morsitans) GN=clpP PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 77/125 (61.60%), Postives = 101/125 (80.80%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++RIIF+  QV+D  A+ I++Q++FL+AE+ +KDI L+INSPGG +TAGM IYD M+  K DVST C+G AASMGAFLLAAG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   19 DIFSRLLKERIIFMTGQVEDHMANLIVAQMMFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTFCMGQAASMGAFLLAAGAKGKRFCLPNSRVMIHQPLGGFQGQATDIEIHAREI 143          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_RALSO (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia solanacearum GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 74/125 (59.20%), Postives = 105/125 (84.00%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IF+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AG+ +YD M+  K DVST+C+G+AASMGAFLLAAG+KGKRY +PN+R+MIHQPLG A G+A+D+ I+ RE+
Sbjct:   41 DIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEIQAREI 165          
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_BURVG (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 75/125 (60.00%), Postives = 105/125 (84.00%), Query Frame = 1
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R++F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE+
Sbjct:   42 DIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREI 166          
The following BLAST results are available for this feature:
BLAST of FC921493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_MACCJ1.752e-3964.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSW1.752e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNJB1.752e-3964.00ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_SYNJA1.752e-3964.00ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BURXL1.752e-3960.80ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNY31.752e-3961.60ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNSC1.752e-3962.40ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SODGM2.289e-3961.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_RALSO2.289e-3959.20ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURVG2.289e-3960.00ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32105F02EF RVDevelopN Citrus clementina cDNA clone C32105F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921493 ID=FC921493; Name=FC921493; organism=Citrus clementina; type=EST; length=667bp
GAAACCACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGAC
AGCATCTTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGA
AAACCCACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATC
AAAACGAGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAAT
AGCACAGACCTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATA
ATAATACTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACT
AACATGCTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGA
CTTGACTGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAG
ATTCTAAAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTT
ACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGT
TTCAACTATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAG
CAGCTGGTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATG
ATCCATCAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCAT
ACGGATTAGAGAGATGT
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