FC921493

Overview
NameFC921493
Unique NameFC921493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_BURS3 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia sp. (strain 383) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 75/125 (60.00%), Postives = 105/125 (84.00%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R++F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE+
Sbjct:   42 DIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREI 166
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_BURCM (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 75/125 (60.00%), Postives = 105/125 (84.00%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R++F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE+
Sbjct:   42 DIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREI 166
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_BURCH (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia cenocepacia (strain HI2424) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 75/125 (60.00%), Postives = 105/125 (84.00%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R++F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE+
Sbjct:   42 DIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREI 166
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_BURCA (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia cenocepacia (strain AU 1054) GN=clpP PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 75/125 (60.00%), Postives = 105/125 (84.00%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R++F+  +V+D TA+ +++QLLFL++E+  KDI L+INSPGGSV+AGM IYD M+  K DVST+C+GLAASMGAFLLA+G+KGKR+ +PN+RVMIHQPLG A G+A+D+ I+ RE+
Sbjct:   42 DIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREI 166
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 77/125 (61.60%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LLR+RIIFLG+ VDD  AD +++Q+LFL+AED +KDI++++NSPGGSVTAG+ IYD M+    DV TIC GLAASMGAFLL+ G+KGKR  +PNAR+MIHQPLG A G+A D+ I+ +E+
Sbjct:   24 DIYSRLLRERIIFLGTGVDDAVADALVAQMLFLEAEDPEKDIQIYVNSPGGSVTAGLAIYDTMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEI 148
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP1_BACLD (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL+ RII LGS +DD  A+ I+SQLLFL+AED +KDI ++INSPGGS+TAGM IYD M+  K  VSTIC G+AASMGAFLLAAG KGKRY +PN+ VMIHQPLG A G+AT++ I  + +
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDTMQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRI 143
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SALPK (ATP-dependent Clp protease proteolytic subunit OS=Salmonella paratyphi A (strain AKU_12601) GN=clpP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.989e-39
Identity = 77/125 (61.60%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAG+ IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGISIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_SALPA (ATP-dependent Clp protease proteolytic subunit OS=Salmonella paratyphi A GN=clpP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.989e-39
Identity = 77/125 (61.60%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAG+ IYD M+  K DVSTIC+G AASMGAFLL AG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  RE+
Sbjct:   32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGISIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREI 156
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_PSEPW (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain W619) GN=clpP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.989e-39
Identity = 77/125 (61.60%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++R+IFL   V+D  A+ +++Q+LFL+AE+  KDI L+INSPGGSVTAGM IYD M+  K DVSTIC+G A SMGAFLLAAG+KGKR+C+PN+RVMIHQPLG   G+ATD+ I  +E+
Sbjct:   35 DIYSRLLKERVIFLVGPVEDYMANLVVAQMLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQEI 159
[Close]
BLAST of FC921493 vs. ExPASy Swiss-Prot
Match: CLPP_PROMH (ATP-dependent Clp protease proteolytic subunit OS=Proteus mirabilis (strain HI4320) GN=clpP PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.989e-39
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:  292 DTTNMLLRQRIIFLGSQVDDLTADFIISQLLFLDAEDSKKDIRLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLLAAGSKGKRYCMPNARVMIHQPLGTAGGKATDMSIRIREM 666
            D  + LL++RIIFL  QV+D  A+ I++Q+LFL+AE+ +KDI L+INSPGG +TAGM IYD M+  KADVSTIC+G A SMGAFLL+AG+KGKR C+PN+RVMIHQPLG   G+ATD+ I  +E+
Sbjct:   32 DIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDINLYINSPGGVITAGMSIYDTMQYIKADVSTICMGQACSMGAFLLSAGAKGKRICLPNSRVMIHQPLGGYQGQATDIQIHAQEI 156
The following BLAST results are available for this feature:
BLAST of FC921493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_BURS32.289e-3960.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCM2.289e-3960.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCH2.289e-3960.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCA2.289e-3960.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNS92.289e-3961.60ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_BACLD2.289e-3963.20ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SALPK2.989e-3961.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALPA2.989e-3961.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEPW2.989e-3961.60ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PROMH2.989e-3962.40ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32105F02EF RVDevelopN Citrus clementina cDNA clone C32105F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921493 ID=FC921493; Name=FC921493; organism=Citrus clementina; type=EST; length=667bp
GAAACCACCCAGCAAACAAATCCAAATAAGAAGATGGAGATGAGTTTGAC
AGCATCTTCATTTTCGAAGCCACTCTTCTTCTCAAACCAATCCCTATCGA
AAACCCACTTTCTCACTGCCGCTAATAACACTAACACTAGCACTACAATC
AAAACGAGGAGACCCACTTGCATAAAGGCCGCGAATAGTTCACCTTCAAT
AGCACAGACCTTGTCTACCAACTGGGATGTCTCCAATTTTGCTGTTAATA
ATAATACTTCATCTCCATATCTGCCCAAATTTGAGGAGCTTGACACCACT
AACATGCTTCTCCGTCAGAGAATTATCTTCTTGGGATCCCAGGTTGATGA
CTTGACTGCTGATTTCATCATAAGTCAGCTCTTATTTCTTGACGCCGAAG
ATTCTAAAAAAGATATCAGGTTGTTTATTAATTCACCTGGTGGCTCTGTT
ACTGCTGGAATGGGAATATATGATGCAATGAAGTTATGCAAGGCTGATGT
TTCAACTATTTGCTTGGGGCTTGCTGCATCTATGGGTGCATTCCTGCTAG
CAGCTGGTTCAAAAGGGAAGAGATATTGCATGCCTAATGCAAGAGTAATG
ATCCATCAACCTCTTGGGACTGCTGGAGGCAAAGCAACAGATATGAGCAT
ACGGATTAGAGAGATGT
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