FC921513
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC7_MOUSE (Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28 Identity = 77/192 (40.10%), Postives = 107/192 (55.73%), Query Frame = 3 Query: 174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR---------------DRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 GL+YD M KH GD HPE+ RI++IW++LQ G+ +C L ++A + L SVH+E HV L +S + D+ + + ++I+ SS AA AAGSV ++A +VA EL + FA+VRPPGHHA+ AMGFC +N+VA+A L +KILIVDWDVH Sbjct: 508 GLVYDSVMLKHQCSCGDNSKHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQHGK---ASKILIVDWDVH 696
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC5_HUMAN (Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28 Identity = 69/192 (35.94%), Postives = 112/192 (58.33%), Query Frame = 3 Query: 174 GLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 G++YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + +VH+E H L ++ ++ DS++ I+ K+ ++++ SS A +A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ L + +L + K+LIVDWD+H Sbjct: 684 GVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIH 872
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC5_PONAB (Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27 Identity = 68/192 (35.42%), Postives = 111/192 (57.81%), Query Frame = 3 Query: 174 GLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 G++YD M KH G+ HPE+ RI++ W++LQ G+ +C + ++A + +VH+E H L ++ ++ DS++ I+ K+ ++++ SS A +A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ L + +L + K+LIVDWD+H Sbjct: 684 GVVYDTFMLKHQCMCGNTHVHPEHAGRIQSTWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKVDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIH 872
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27 Identity = 69/181 (38.12%), Postives = 103/181 (56.91%), Query Frame = 3 Query: 159 IKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISS-KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVA--XSFLLNERPELGINKILIVDWDVH 692 ++ R GL+YDE+M H ++HPE P RI I L+ G+ RC++L ++ A LL+ H+ +V ++ K D R+ + +SIY+ + A LA G+ + E V GE+ + A+VRPPGHHAEP+ A GFC +N+VAVA + ++ R +ILIVDWDVH Sbjct: 476 LQNRTGLVYDEKMMSHCNLWDNHHPETPQRILRIMCHLEEVGLAARCLILPARPALGSELLTCHSAEYVEHLRTTEKMKTRDLHRE--GANFDSIYICPSTFACAKLATGAACRLVEAVLSGEVLNGIAVVRPPGHHAEPNAACGFCFFNSVAVAARHAQIIAGR----ALRILIVDWDVH 650 HSP 2 Score: 106.301 bits (264), Expect = 1.613e-22 Identity = 57/173 (32.95%), Postives = 99/173 (57.23%), Query Frame = 3 Query: 174 GLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 GL++DE++ + D PE+P R+ AI +L G+ RCV + A+ + L+ VH+ +++L++ R +A +S+YL+ S A LA GSV+ + + + E+ + A++RPPGHHA+ + G+C++N++AVA + + I ++LIVDWDVH Sbjct: 86 GLVFDEQLNDFHCLWDDSFPESPERLHAIREQLILEGLLGRCVSFQAWFAEKEELMLVHSLEYIDLMETTQYMNEGELRV-LAETYDSVYLHPNSYSCACLATGSVLRLVDALMGAEIRNGMAVIRPPGHHAQHNLMDGYCMFNHLAVAARYAQKKH---RIQRVLIVDWDVH 254
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA15_ARATH (Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.841e-27 Identity = 73/191 (38.22%), Postives = 102/191 (53.40%), Query Frame = 3 Query: 129 MEVKSGEGRTIKRRVGLLYDERMCKHNTPD--GDYHPENPNRIKAIWNKLQAAGI-PRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 +E K G + + +DERM H+ + HPE P+R++AI L AG+ P RC+ +N++E + L VHT HV+ + S + + + Y NE S+ AA LAAG ++A + G + + FA+VRPPGHHA AMGFCL+NN AVA G K+LIVDWDVH Sbjct: 136 VEEKYGGSSSATSSTAVGFDERMLLHSEFEVKAQPHPERPDRLRAIAASLATAGVFPGRCLPINAREITKQELQMVHTSEHVDAVDTTSQLLY-------SYFTSDTYANEYSARAARLAAGLCTDLATDIFTGRVKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALV----AQAAGAKKVLIVDWDVH 315
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: CLR3_SCHPO (Histone deacetylase clr3 OS=Schizosaccharomyces pombe GN=clr3 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.841e-27 Identity = 72/193 (37.31%), Postives = 109/193 (56.48%), Query Frame = 3 Query: 138 KSGEGRTIKRRVGLLYDERMCKHNT-PDGDYHPENPNRIKAIWNKLQAAG----IPRRCVV---LNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 +S E I ++ GL YD RM H T + D HPE+P R+ ++ ++ AG +P V + ++EA + LL VH++ + + N + + + +S+Y N S+ A LA GS IE V G++ +AFA+VRPPGHHAEP + GFCL+NNV+V +L P+ I ++LIVDWD+H Sbjct: 46 ESHEMSQILKKSGLCYDPRMRFHATLSEVDDHPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDRVTNTEKMSHEDLAN-LEKISDSLYYNNESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPPGHHAEPHKPGGFCLFNNVSVTARSMLQRFPD-KIKRVLIVDWDIH 236
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA4_CAEEL (Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26 Identity = 72/188 (38.30%), Postives = 108/188 (57.45%), Query Frame = 3 Query: 174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNL--IKNISSKQFDSRRDRIASKL----------NSIYLNEGSSE-AAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 GL YD+ M +H G+ H EN RI++IW+KL G ++C + +K+A + L VH++ + + + + D+ + L + Y N+ S++ AA LAAG++IE++ +VAEG L + FA +RPPGHHAE ++AMGFC +NNVAVA L + P KI I+DWDVH Sbjct: 410 GLGYDQAMVRHECCCGNNASHVENGGRIQSIWSKLIEHGHVQKCEKVTAKKASLEQLQLVHSQTYTTFFAVSPTACLKIDANSLPLKRFLQLPCGGIGVDSDTYFNDASTQTAARLAAGTLIELSSQVAEGRLKNGFACIRPPGHHAEHEQAMGFCFFNNVAVAVKVLQTKYP-AQCAKIAIIDWDVH 596
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26 Identity = 67/178 (37.64%), Postives = 97/178 (54.49%), Query Frame = 3 Query: 159 IKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 ++ R GL+YD+ M H +HPE P RI I +L+ G+ RC+ L + A + LL+ H+ +V ++ + K R +S +SIY+ + A LA G+ + E V GE+ + A+VRPPGHHAE D A GFC +N+VAVA + +ILIVDWDVH Sbjct: 477 LQSRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLTCHSAEYVGHLR-ATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPGHHAEQDAACGFCFFNSVAVAARHA--QTISGHALRILIVDWDVH 651 HSP 2 Score: 109.768 bits (273), Expect = 1.459e-23 Identity = 60/173 (34.68%), Postives = 99/173 (57.23%), Query Frame = 3 Query: 174 GLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 GL+ DE++ + + D PE P R+ AI +L G+ RCV ++ A+ + L+ VH+ +++L++ R +A +S+YL+ S A LA+GSV+ + + V E+ + AI+RPPGHHA+ G+C++N+VAVA + + I ++LIVDWDVH Sbjct: 87 GLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRV-LADTYDSVYLHPNSYSCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKH---RIRRVLIVDWDVH 255
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA4_CAEBR (Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25 Identity = 69/188 (36.70%), Postives = 104/188 (55.32%), Query Frame = 3 Query: 174 GLLYDERMCKHNT--PDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNL--IKNISSKQFDSRRDRIASKL----------NSIYLNEGSSE-AAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 GL YD M +H + H EN RI+ IW+KL G +C + +K+A + L VH++ + + + + D+ + L + Y N+ S++ AA LAAG++IE++ +VAEG L + FA +RPPGHHAE ++A+GFC +NNVAV L + P + KI I+DWDVH Sbjct: 483 GLGYDPLMARHECVCSNNSNHVENGERIQRIWSKLTEEGHVAKCERITAKKASLEQLQMVHSQTYTTFFAVSPTACLKIDANALPLKRFLQLPCGGIGIDSDTYFNDASTQIAARLAAGTLIELSSQVAEGRLKNGFACIRPPGHHAEAEQALGFCFFNNVAVTAKVLQAKYP-VQCAKIAIIDWDVH 669
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA1_YEAST (Histone deacetylase HDA1 OS=Saccharomyces cerevisiae GN=HDA1 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25 Identity = 68/193 (35.23%), Postives = 99/193 (51.30%), Query Frame = 3 Query: 168 RVGLLYDERMCKHNTPDGDY------HPENPNRIKAIWNKLQAAGIPRRCVV------------LNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692 + GL YD RM H Y HPE+P RI I+ L G+ + + + A + +L VHT+ H+ I++ + K + K +S+Y N S +A L G IE + V EG + ++ A+VRPPGHHAEP A GFCL++NVAVA +L PE + +I+I+DWD+H Sbjct: 57 KTGLCYDVRMRYHAKIFTSYFEYIDPHPEDPRRIYRIYKILAENGLINDPTLSGVDDLGDLMLKIPVRAATSEEILEVHTKEHLEFIES-TEKMSREELLKETEKGDSVYFNNDSYASARLPCGGAIEACKAVVEGRVKNSLAVVRPPGHHAEPQAAGGFCLFSNVAVAAKNILKNYPE-SVRRIMILDWDIH 247 The following BLAST results are available for this feature:
BLAST of FC921513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921513 ID=FC921513; Name=FC921513; organism=Citrus clementina; type=EST; length=696bpback to top |