FC921513

Overview
NameFC921513
Unique NameFC921513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC7_MOUSE (Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.968e-28
Identity = 77/192 (40.10%), Postives = 107/192 (55.73%), Query Frame = 3
Query:  174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR---------------DRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            GL+YD  M KH    GD   HPE+  RI++IW++LQ  G+  +C  L  ++A  + L SVH+E HV L     +S  + D+ +                 +    ++I+    SS AA  AAGSV ++A +VA  EL + FA+VRPPGHHA+   AMGFC +N+VA+A   L         +KILIVDWDVH
Sbjct:  508 GLVYDSVMLKHQCSCGDNSKHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQHGK---ASKILIVDWDVH 696          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC5_HUMAN (Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28
Identity = 69/192 (35.94%), Postives = 112/192 (58.33%), Query Frame = 3
Query:  174 GLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            G++YD  M KH    G+   HPE+  RI++IW++LQ  G+  +C  +  ++A    + +VH+E H  L     ++ ++ DS++    I+ K+             ++++    SS A  +A G ++E+A +VA GEL + FAI+RPPGHHAE   AMGFC +N+VA+    L   + +L + K+LIVDWD+H
Sbjct:  684 GVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIH 872          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC5_PONAB (Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 68/192 (35.42%), Postives = 111/192 (57.81%), Query Frame = 3
Query:  174 GLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKN--ISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            G++YD  M KH    G+   HPE+  RI++ W++LQ  G+  +C  +  ++A    + +VH+E H  L     ++ ++ DS++    I+ K+             ++++    SS A  +A G ++E+A +VA GEL + FAI+RPPGHHAE   AMGFC +N+VA+    L   + +L + K+LIVDWD+H
Sbjct:  684 GVVYDTFMLKHQCMCGNTHVHPEHAGRIQSTWSRLQETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKVDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLLELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKLNVGKVLIVDWDIH 872          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27
Identity = 69/181 (38.12%), Postives = 103/181 (56.91%), Query Frame = 3
Query:  159 IKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISS-KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVA--XSFLLNERPELGINKILIVDWDVH 692
            ++ R GL+YDE+M  H     ++HPE P RI  I   L+  G+  RC++L ++ A    LL+ H+  +V  ++     K  D  R+   +  +SIY+   +   A LA G+   + E V  GE+ +  A+VRPPGHHAEP+ A GFC +N+VAVA   + ++  R      +ILIVDWDVH
Sbjct:  476 LQNRTGLVYDEKMMSHCNLWDNHHPETPQRILRIMCHLEEVGLAARCLILPARPALGSELLTCHSAEYVEHLRTTEKMKTRDLHRE--GANFDSIYICPSTFACAKLATGAACRLVEAVLSGEVLNGIAVVRPPGHHAEPNAACGFCFFNSVAVAARHAQIIAGR----ALRILIVDWDVH 650          

HSP 2 Score: 106.301 bits (264), Expect = 1.613e-22
Identity = 57/173 (32.95%), Postives = 99/173 (57.23%), Query Frame = 3
Query:  174 GLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            GL++DE++   +    D  PE+P R+ AI  +L   G+  RCV   +  A+ + L+ VH+  +++L++          R  +A   +S+YL+  S   A LA GSV+ + + +   E+ +  A++RPPGHHA+ +   G+C++N++AVA  +   +     I ++LIVDWDVH
Sbjct:   86 GLVFDEQLNDFHCLWDDSFPESPERLHAIREQLILEGLLGRCVSFQAWFAEKEELMLVHSLEYIDLMETTQYMNEGELRV-LAETYDSVYLHPNSYSCACLATGSVLRLVDALMGAEIRNGMAVIRPPGHHAQHNLMDGYCMFNHLAVAARYAQKKH---RIQRVLIVDWDVH 254          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA15_ARATH (Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.841e-27
Identity = 73/191 (38.22%), Postives = 102/191 (53.40%), Query Frame = 3
Query:  129 MEVKSGEGRTIKRRVGLLYDERMCKHNTPD--GDYHPENPNRIKAIWNKLQAAGI-PRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            +E K G   +      + +DERM  H+  +     HPE P+R++AI   L  AG+ P RC+ +N++E   + L  VHT  HV+ +   S   +       +   +  Y NE S+ AA LAAG   ++A  +  G + + FA+VRPPGHHA    AMGFCL+NN AVA           G  K+LIVDWDVH
Sbjct:  136 VEEKYGGSSSATSSTAVGFDERMLLHSEFEVKAQPHPERPDRLRAIAASLATAGVFPGRCLPINAREITKQELQMVHTSEHVDAVDTTSQLLY-------SYFTSDTYANEYSARAARLAAGLCTDLATDIFTGRVKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALV----AQAAGAKKVLIVDWDVH 315          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: CLR3_SCHPO (Histone deacetylase clr3 OS=Schizosaccharomyces pombe GN=clr3 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.841e-27
Identity = 72/193 (37.31%), Postives = 109/193 (56.48%), Query Frame = 3
Query:  138 KSGEGRTIKRRVGLLYDERMCKHNT-PDGDYHPENPNRIKAIWNKLQAAG----IPRRCVV---LNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            +S E   I ++ GL YD RM  H T  + D HPE+P R+  ++  ++ AG    +P    V   + ++EA  + LL VH++   + + N      +   + +    +S+Y N  S+  A LA GS IE    V  G++ +AFA+VRPPGHHAEP +  GFCL+NNV+V    +L   P+  I ++LIVDWD+H
Sbjct:   46 ESHEMSQILKKSGLCYDPRMRFHATLSEVDDHPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDRVTNTEKMSHEDLAN-LEKISDSLYYNNESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPPGHHAEPHKPGGFCLFNNVSVTARSMLQRFPD-KIKRVLIVDWDIH 236          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA4_CAEEL (Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26
Identity = 72/188 (38.30%), Postives = 108/188 (57.45%), Query Frame = 3
Query:  174 GLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNL--IKNISSKQFDSRRDRIASKL----------NSIYLNEGSSE-AAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            GL YD+ M +H    G+   H EN  RI++IW+KL   G  ++C  + +K+A  + L  VH++ +     +   +  + D+    +   L          +  Y N+ S++ AA LAAG++IE++ +VAEG L + FA +RPPGHHAE ++AMGFC +NNVAVA   L  + P     KI I+DWDVH
Sbjct:  410 GLGYDQAMVRHECCCGNNASHVENGGRIQSIWSKLIEHGHVQKCEKVTAKKASLEQLQLVHSQTYTTFFAVSPTACLKIDANSLPLKRFLQLPCGGIGVDSDTYFNDASTQTAARLAAGTLIELSSQVAEGRLKNGFACIRPPGHHAEHEQAMGFCFFNNVAVAVKVLQTKYP-AQCAKIAIIDWDVH 596          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.410e-26
Identity = 67/178 (37.64%), Postives = 97/178 (54.49%), Query Frame = 3
Query:  159 IKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            ++ R GL+YD+ M  H      +HPE P RI  I  +L+  G+  RC+ L  + A +  LL+ H+  +V  ++  + K       R +S  +SIY+   +   A LA G+   + E V  GE+ +  A+VRPPGHHAE D A GFC +N+VAVA      +       +ILIVDWDVH
Sbjct:  477 LQSRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLTCHSAEYVGHLR-ATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPGHHAEQDAACGFCFFNSVAVAARHA--QTISGHALRILIVDWDVH 651          

HSP 2 Score: 109.768 bits (273), Expect = 1.459e-23
Identity = 60/173 (34.68%), Postives = 99/173 (57.23%), Query Frame = 3
Query:  174 GLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            GL+ DE++ + +    D  PE P R+ AI  +L   G+  RCV   ++ A+ + L+ VH+  +++L++          R  +A   +S+YL+  S   A LA+GSV+ + + V   E+ +  AI+RPPGHHA+     G+C++N+VAVA  +   +     I ++LIVDWDVH
Sbjct:   87 GLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRV-LADTYDSVYLHPNSYSCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKH---RIRRVLIVDWDVH 255          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA4_CAEBR (Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 69/188 (36.70%), Postives = 104/188 (55.32%), Query Frame = 3
Query:  174 GLLYDERMCKHNT--PDGDYHPENPNRIKAIWNKLQAAGIPRRCVVLNSKEAKDKNLLSVHTENHVNL--IKNISSKQFDSRRDRIASKL----------NSIYLNEGSSE-AAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            GL YD  M +H     +   H EN  RI+ IW+KL   G   +C  + +K+A  + L  VH++ +     +   +  + D+    +   L          +  Y N+ S++ AA LAAG++IE++ +VAEG L + FA +RPPGHHAE ++A+GFC +NNVAV    L  + P +   KI I+DWDVH
Sbjct:  483 GLGYDPLMARHECVCSNNSNHVENGERIQRIWSKLTEEGHVAKCERITAKKASLEQLQMVHSQTYTTFFAVSPTACLKIDANALPLKRFLQLPCGGIGIDSDTYFNDASTQIAARLAAGTLIELSSQVAEGRLKNGFACIRPPGHHAEAEQALGFCFFNNVAVTAKVLQAKYP-VQCAKIAIIDWDVH 669          
BLAST of FC921513 vs. ExPASy Swiss-Prot
Match: HDA1_YEAST (Histone deacetylase HDA1 OS=Saccharomyces cerevisiae GN=HDA1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 68/193 (35.23%), Postives = 99/193 (51.30%), Query Frame = 3
Query:  168 RVGLLYDERMCKHNTPDGDY------HPENPNRIKAIWNKLQAAGIPRRCVV------------LNSKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAXSFLLNERPELGINKILIVDWDVH 692
            + GL YD RM  H      Y      HPE+P RI  I+  L   G+     +            +  + A  + +L VHT+ H+  I++ + K       +   K +S+Y N  S  +A L  G  IE  + V EG + ++ A+VRPPGHHAEP  A GFCL++NVAVA   +L   PE  + +I+I+DWD+H
Sbjct:   57 KTGLCYDVRMRYHAKIFTSYFEYIDPHPEDPRRIYRIYKILAENGLINDPTLSGVDDLGDLMLKIPVRAATSEEILEVHTKEHLEFIES-TEKMSREELLKETEKGDSVYFNNDSYASARLPCGGAIEACKAVVEGRVKNSLAVVRPPGHHAEPQAAGGFCLFSNVAVAAKNILKNYPE-SVRRIMILDWDIH 247          
The following BLAST results are available for this feature:
BLAST of FC921513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
HDAC7_MOUSE1.968e-2840.10Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=... [more]
HDAC5_HUMAN2.570e-2835.94Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=... [more]
HDAC5_PONAB1.275e-2735.42Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=... [more]
HDAC6_MOUSE2.176e-2738.12Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=... [more]
HDA15_ARATH2.841e-2738.22Histone deacetylase 15 OS=Arabidopsis thaliana GN=... [more]
CLR3_SCHPO2.841e-2737.31Histone deacetylase clr3 OS=Schizosaccharomyces po... [more]
HDA4_CAEEL1.080e-2638.30Histone deacetylase 4 OS=Caenorhabditis elegans GN... [more]
HDAC6_HUMAN1.410e-2637.64Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=... [more]
HDA4_CAEBR1.559e-2536.70Histone deacetylase 4 OS=Caenorhabditis briggsae G... [more]
HDA1_YEAST7.738e-2535.23Histone deacetylase HDA1 OS=Saccharomyces cerevisi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32105G12EF RVDevelopN Citrus clementina cDNA clone C32105G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921513 ID=FC921513; Name=FC921513; organism=Citrus clementina; type=EST; length=696bp
GATTATCTCAAAGTACATCAGATCGTCACTTTACTTGAGCGATCTCTCCT
CTCTCTGCAGTATTCACGTTGACGTATACATTCAAAAAATTAAGAATTAC
TAATTAGTGTGGCTGCCTGCCTGCCAGTATGGAGGTGAAATCAGGTGAGG
GCAGGACCATAAAACGACGCGTGGGCCTACTGTACGATGAGAGAATGTGT
AAACATAACACACCTGACGGTGATTATCACCCCGAGAACCCCAACCGCAT
CAAAGCTATTTGGAACAAGCTCCAAGCCGCTGGCATTCCTCGACGGTGTG
TCGTTTTAAATTCCAAAGAAGCGAAAGACAAAAATCTACTGTCTGTGCAC
ACGGAAAATCATGTTAATTTGATTAAGAATATAAGCTCAAAGCAGTTTGA
TTCCCGAAGAGATAGGATTGCGTCAAAATTAAATTCAATTTACTTAAATG
AAGGATCATCGGAGGCTGCTTATCTTGCTGCCGGTTCAGTTATAGAGGTC
GCCGAGAGAGTTGCCGAAGGGGAGTTGAATTCTGCTTTTGCTATTGTGAG
ACCTCCTGGTCATCATGCTGAACCAGATGAAGCTATGGGATTTTGTCTAT
ACAACAATGTGGCTGTTGCTGNCAGTTTCCTATTAAATGAAAGACCAGAA
CTGGGAATCAATAAAATTTTGATTGTTGATTGGGATGTTCACATGG
back to top