FC921697

Overview
NameFC921697
Unique NameFC921697
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921697 vs. ExPASy Swiss-Prot
Match: TDH_SHISS (L-threonine 3-dehydrogenase OS=Shigella sonnei (strain Ss046) GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 67/187 (35.83%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  147 LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 707
            +P LG  D+ ++I+   ICG+DVH +     +   +  PMV+GHE  G +  +G EVK  ++GDRV+ E  I+CGHC  C+ G  +LC      G     G  A  +V PA   +K+PDN+S +  ++ +P    VH     ++  E +V++ G+GPIG++    A+  GA  ++ITDV+  RL +A
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELA 204          
BLAST of FC921697 vs. ExPASy Swiss-Prot
Match: TDH_SHIFL (L-threonine 3-dehydrogenase OS=Shigella flexneri GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 67/187 (35.83%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  147 LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 707
            +P LG  D+ ++I+   ICG+DVH +     +   +  PMV+GHE  G +  +G EVK  ++GDRV+ E  I+CGHC  C+ G  +LC      G     G  A  +V PA   +K+PDN+S +  ++ +P    VH     ++  E +V++ G+GPIG++    A+  GA  ++ITDV+  RL +A
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELA 204          
BLAST of FC921697 vs. ExPASy Swiss-Prot
Match: TDH_SHIF8 (L-threonine 3-dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 67/187 (35.83%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  147 LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 707
            +P LG  D+ ++I+   ICG+DVH +     +   +  PMV+GHE  G +  +G EVK  ++GDRV+ E  I+CGHC  C+ G  +LC      G     G  A  +V PA   +K+PDN+S +  ++ +P    VH     ++  E +V++ G+GPIG++    A+  GA  ++ITDV+  RL +A
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELA 204          
BLAST of FC921697 vs. ExPASy Swiss-Prot
Match: TDH_SHIBS (L-threonine 3-dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 67/187 (35.83%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  147 LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 707
            +P LG  D+ ++I+   ICG+DVH +     +   +  PMV+GHE  G +  +G EVK  ++GDRV+ E  I+CGHC  C+ G  +LC      G     G  A  +V PA   +K+PDN+S +  ++ +P    VH     ++  E +V++ G+GPIG++    A+  GA  ++ITDV+  RL +A
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELA 204          
BLAST of FC921697 vs. ExPASy Swiss-Prot
Match: TDH_SHIB3 (L-threonine 3-dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 67/187 (35.83%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  147 LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 707
            +P LG  D+ ++I+   ICG+DVH +     +   +  PMV+GHE  G +  +G EVK  ++GDRV+ E  I+CGHC  C+ G  +LC      G     G  A  +V PA   +K+PDN+S +  ++ +P    VH     ++  E +V++ G+GPIG++    A+  GA  ++ITDV+  RL +A
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELA 204          
BLAST of FC921697 vs. ExPASy Swiss-Prot
Match: TDH_FRAP2 (L-threonine 3-dehydrogenase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 69/187 (36.90%), Postives = 109/187 (58.29%), Query Frame = 3
Query:  147 LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 707
            +P  G  DV ++IK   ICG+D+H +   + +   +  PM+ GHE AG +   G+ V S++VGDRV+ E  + CG C  C+AG  +LC +    G     G+ A  +V PA   +K+PD++S +  +  +P+   +H     N+  E +V+I G+GPIGL+ +  AR  GA RI+ITD++  RL +A
Sbjct:   21 MPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQATIPVPMITGHEFAGEVVAKGNGVTSVDVGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIG-VNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINKYRLQMA 205          
BLAST of FC921697 vs. ExPASy Swiss-Prot
Match: TDH_ENTS8 (L-threonine 3-dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 67/186 (36.02%), Postives = 106/186 (56.99%), Query Frame = 3
Query:  150 PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 707
            P +G  D+ ++I+   ICG+DVH +     +   +  PMV+GHE  G +  +G EVK  ++GDRV+ E  I+CGHC  C+ G  +LC      G     G  A  +V PA   +K+PDN+S +  ++ +P    VH     ++  E +V++ G+GPIG++    A+  GA  ++ITDV+  RLS+A
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVG-VNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLSLA 204          
BLAST of FC921697 vs. ExPASy Swiss-Prot
Match: TDH_ENT38 (L-threonine 3-dehydrogenase OS=Enterobacter sp. (strain 638) GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 67/186 (36.02%), Postives = 106/186 (56.99%), Query Frame = 3
Query:  150 PTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 707
            P +G  D+ ++I+   ICG+DVH +     +   +  PMV+GHE  G +  +G EVK  ++GDRV+ E  I+CGHC  C+ G  +LC      G     G  A  +V PA   +K+PDN+S +  ++ +P    VH     ++  E +V++ G+GPIG++    A+  GA  ++ITDV+  RLS+A
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVG-VNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLSLA 204          
BLAST of FC921697 vs. ExPASy Swiss-Prot
Match: TDH_ECOUT (L-threonine 3-dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 67/187 (35.83%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  147 LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 707
            +P LG  D+ ++I+   ICG+DVH +     +   +  PMV+GHE  G +  +G EVK  ++GDRV+ E  I+CGHC  C+ G  +LC      G     G  A  +V PA   +K+PDN+S +  ++ +P    VH     ++  E +V++ G+GPIG++    A+  GA  ++ITDV+  RL +A
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELA 204          
BLAST of FC921697 vs. ExPASy Swiss-Prot
Match: TDH_ECOSM (L-threonine 3-dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 67/187 (35.83%), Postives = 106/187 (56.68%), Query Frame = 3
Query:  147 LPTLGPQDVKVRIKALGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKSLEVGDRVALEPGISCGHCSLCKAGSYNLCPEMRFFGSPPTNGSLAHKVVHPAKLCYKLPDNVSLEEGAMCEPLSVGVHACRRANVGPETNVMIMGSGPIGLVTLLAARAFGAPRIIITDVDVQRLSIA 707
            +P LG  D+ ++I+   ICG+DVH +     +   +  PMV+GHE  G +  +G EVK  ++GDRV+ E  I+CGHC  C+ G  +LC      G     G  A  +V PA   +K+PDN+S +  ++ +P    VH     ++  E +V++ G+GPIG++    A+  GA  ++ITDV+  RL +A
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVG-VNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELA 204          
The following BLAST results are available for this feature:
BLAST of FC921697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
TDH_SHISS1.653e-2835.83L-threonine 3-dehydrogenase OS=Shigella sonnei (st... [more]
TDH_SHIFL1.653e-2835.83L-threonine 3-dehydrogenase OS=Shigella flexneri G... [more]
TDH_SHIF81.653e-2835.83L-threonine 3-dehydrogenase OS=Shigella flexneri s... [more]
TDH_SHIBS1.653e-2835.83L-threonine 3-dehydrogenase OS=Shigella boydii ser... [more]
TDH_SHIB31.653e-2835.83L-threonine 3-dehydrogenase OS=Shigella boydii ser... [more]
TDH_FRAP21.653e-2836.90L-threonine 3-dehydrogenase OS=Francisella philomi... [more]
TDH_ENTS81.653e-2836.02L-threonine 3-dehydrogenase OS=Enterobacter sakaza... [more]
TDH_ENT381.653e-2836.02L-threonine 3-dehydrogenase OS=Enterobacter sp. (s... [more]
TDH_ECOUT1.653e-2835.83L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECOSM1.653e-2835.83L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionC32108C09EF RVDevelopN Citrus clementina cDNA clone C32108C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921697 ID=FC921697; Name=FC921697; organism=Citrus clementina; type=EST; length=736bp
CCGGGGGTAAAAAGAAGACAAGAGGAGAAGAAAAAAAGGGAAACATTGAA
ATGGCTGAAGCAATCAGAGATGACGAAGGAGACAAGAATCAGAACATGGC
TGCTTGGCTGCTTGGAATCAAAACTCTGAAAATTCAGCCATATCATTTGC
CTACCCTAGGTCCTCAAGATGTGAAAGTACGAATTAAGGCTCTTGGAATA
TGTGGAAGTGATGTTCATCACTTCAAGACTATGAGATGTGCCAATTTTAT
TGTGAAAAAACCTATGGTAATTGGACATGAGTGTGCTGGGATCATAGAAG
AAGTTGGCAGTGAAGTTAAGTCCCTTGAGGTGGGTGATCGTGTGGCTCTA
GAACCTGGTATTAGTTGCGGACACTGCAGTCTCTGCAAAGCTGGTAGCTA
TAATCTTTGCCCTGAAATGAGATTCTTTGGATCTCCTCCAACCAACGGCT
CTCTTGCCCATAAGGTTGTGCATCCAGCAAAGTTATGTTACAAGTTACCT
GACAATGTGAGCTTGGAGGAAGGAGCAATGTGTGAACCCTTAAGTGTTGG
TGTCCATGCCTGTCGCCGTGCAAATGTTGGACCTGAAACCAATGTAATGA
TCATGGGATCAGGACCGATAGGCCTTGTTACCCTGTTAGCTGCTCGAGCA
TTTGGTGCCCCCAGAATTATCATCACTGATGTTGATGTTCAGCGTCTATC
TATTGCAAGTATCTTGGCGCGGATGAACAGCTAAAG
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