FC921711

Overview
NameFC921711
Unique NameFC921711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.333e-49
Identity = 87/136 (63.97%), Postives = 107/136 (78.68%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEWGVT+YPIVPGHEIVG VT+VG+ V K K GDKVGVGVLV SC++C+     LENYC   ILTY +   DGT   GGYSD++V D+H+++R+P+N PLDAGAPLLCAGIT YSP+ Y+G+ +PG  +GV GLGG
Sbjct:   59 NEWGVTHYPIVPGHEIVGIVTEVGSKVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGG 194          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 7.700e-48
Identity = 83/136 (61.03%), Postives = 103/136 (75.74%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEWG+T YP+VPGHEIVG VT+VG  V KF  GDKVGVG +  SC+ C+S   G ENYCP MILT  + + D T T+GGYSD +V  + +++R PDN+PLD  APLLCAG+TVYSPM Y+G+ +PG H+GV GLGG
Sbjct:   55 NEWGLTTYPLVPGHEIVGVVTEVGAKVKKFNAGDKVGVGYMAGSCRSCDSCNDGDENYCPKMILTSGAKNFDDTMTHGGYSDHMVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGG 190          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.006e-47
Identity = 85/136 (62.50%), Postives = 103/136 (75.74%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            N WG T YPIVPGHEIVG VT+VG+ V K K GD VG+G LV SC+ CES     E++C N I TY SI  DGT T+GGYSD +V D+H++LR+P N+PLD+GAPLLCAGIT YSP+ YYG+ +PG  +GV GLGG
Sbjct:   59 NNWGFTTYPIVPGHEIVGVVTEVGSKVEKVKVGDNVGIGCLVGSCRSCESCCDNRESHCENTIDTYGSIYFDGTMTHGGYSDTMVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKPGTKIGVVGLGG 194          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 3.822e-47
Identity = 83/136 (61.03%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            N+WG   YP+VPGHEIVG VT VG  V+KFK GD VGVG  V SC+ C+S  +G ENYCP M++T N  D  G  T GG+SD IVV++HYVLR P  +PLD  APLLCAG+TVYSPM+ +G+  PG+H+GV GLGG
Sbjct:  129 NDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGFFVGSCRTCDSCGKGYENYCPTMVITSNGKDYGGAATQGGFSDAIVVNEHYVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGG 264          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 6.519e-47
Identity = 84/136 (61.76%), Postives = 103/136 (75.74%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEWG+T YPIVPGHEIVG VT+VG+ V KFK GD VGVG LV SC  CE+     EN C   + TY   + DG+ TYGGY+D +V DQH+VLR+P+N+PLD+GAPLLCAGIT YSP+ Y+G+ +PG  +GV GLGG
Sbjct:   36 NEWGMTTYPIVPGHEIVGRVTEVGSKVEKFKVGDAVGVGCLVGSCLSCENCDDDSENNCAKQVQTYAFTNVDGSITYGGYADSMVADQHFVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDKPGTKVGVVGLGG 171          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 4.225e-46
Identity = 84/139 (60.43%), Postives = 101/139 (72.66%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRD---GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            N+WG   YP+VPGHEIVG VT VG  V+KFK GD VGVG  VASC+ CE    G ENYC  M+ T N +D D   G  T GG+SD IVV++HYVLR P  +PLD+ APLLCAG+TVYSPM+ +G+  PG+H+GV GLGG
Sbjct:  129 NDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVASCRGCECCGNGYENYCAKMVTTCNGVDHDHGGGAATQGGFSDAIVVNEHYVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGG 267          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.518e-46
Identity = 83/136 (61.03%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEWG   YP+VPGHEIVG VT VG  V+KFK GD VGVG  V SC+ C+S  +G ENYCP M++T N  D  G  T GG+SD++VV Q YV+R P ++P D  APLLCAG+TVYSPM+ YG+  PG+HLGV GLGG
Sbjct:   54 NEWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVDSCRACDSCGKGYENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPGKHLGVVGLGG 189          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.207e-46
Identity = 84/145 (57.93%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCP-NMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN--------MPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEW    YP+V GHEI G VT+VG NV++FK GD+VGVG +V +C  CES + G ENYC   ++ TYNS+DRDGT+TYGGYSD +VV Q +V+RFP +        +PLD+GAPLLCAG+TVY+PM  +G+ E G+H+GV GLGG
Sbjct:   69 NEWRNAVYPVVAGHEITGVVTEVGKNVARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVVFTYNSVDRDGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLGG 213          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.577e-45
Identity = 79/136 (58.09%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEW  + YP+VPGHEI+G V+++GN VSKF  GDKVGVG +V SC+ CES ++  ENYC   I TYN +  DGT  YGGYSD IVVD+ Y ++ P  +PL + APLLCAGI++YSPM Y+G+T P +H+G+ GLGG
Sbjct:   60 NEWHSSIYPLVPGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAIATYNGVHHDGTINYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIVGLGG 195          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.577e-45
Identity = 82/136 (60.29%), Postives = 99/136 (72.79%), Query Frame = 1
Query:    1 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            NEWG   YP+VPGHEIVG V  VG  V++FK GD VGVG  V SC+ C+S  +G ENYCP M++T N  D  G  T GG+SD++VV Q YVLR P ++P D  APLLCAG+TVYSPM+ YG+  PG+HLGV GLGG
Sbjct:   54 NEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACDSCGKGDENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGG 189          
The following BLAST results are available for this feature:
BLAST of FC921711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
GEDH1_OCIBA5.333e-4963.97Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CADH7_ARATH7.700e-4861.03Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
MTDH_APIGR1.006e-4762.50Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
CAD8B_ORYSJ3.822e-4761.03Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
MTDH_PETCR6.519e-4761.76Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
CAD8C_ORYSJ4.225e-4660.43Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CAD8D_ORYSJ5.518e-4661.03Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CADH7_ORYSJ7.207e-4657.93Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH6_ARATH3.577e-4558.09Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CAD8A_ORYSJ3.577e-4560.29Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC32108D12EF RVDevelopN Citrus clementina cDNA clone C32108D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921711 ID=FC921711; Name=FC921711; organism=Citrus clementina; type=EST; length=410bp
AATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCATGAAATTGT
TGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAAAGAGGGTG
ACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAATGTGAAAGC
AGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTTACATATAA
CTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTCAGATCTGA
TTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACATGCCTCTT
GATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTACAGCCCAAT
GATATATTATGGAATGACTGAGCCAGGCCAGCATTTGGGTGTAGCAGGAC
TTGGTGGGCT
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