FC921711

Overview
NameFC921711
Unique NameFC921711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: ADH_STAAS (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=adh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   37 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            GHE +G V +V  +V   K GD+V +  +  SC +CE    G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y   +     +PGQ LGV G+GG
Sbjct:   57 GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYK-AVKVSNVKPGQWLGVFGIGG 172          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: ADH_STAAR (Alcohol dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=adh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   37 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            GHE +G V +V  +V   K GD+V +  +  SC +CE    G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y   +     +PGQ LGV G+GG
Sbjct:   57 GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYK-AVKVSNVKPGQWLGVFGIGG 172          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: ADH_STAAN (Alcohol dehydrogenase OS=Staphylococcus aureus (strain N315) GN=adh PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   37 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            GHE +G V +V  +V   K GD+V +  +  SC +CE    G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y   +     +PGQ LGV G+GG
Sbjct:   57 GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYK-AVKVSNVKPGQWLGVFGIGG 172          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: ADH_STAAM (Alcohol dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=adh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   37 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            GHE +G V +V  +V   K GD+V +  +  SC +CE    G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y   +     +PGQ LGV G+GG
Sbjct:   57 GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYK-AVKVSNVKPGQWLGVFGIGG 172          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: ADH_STAAC (Alcohol dehydrogenase OS=Staphylococcus aureus (strain COL) GN=adh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   37 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            GHE +G V +V  +V   K GD+V +  +  SC +CE    G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y   +     +PGQ LGV G+GG
Sbjct:   57 GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYK-AVKVSNVKPGQWLGVFGIGG 172          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: ADH_STAAB (Alcohol dehydrogenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=adh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   37 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            GHE +G V +V  +V   K GD+V +  +  SC +CE    G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y   +     +PGQ LGV G+GG
Sbjct:   57 GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYK-AVKVSNVKPGQWLGVFGIGG 172          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: ADH_STAA8 (Alcohol dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325) GN=adh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   37 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            GHE +G V +V  +V   K GD+V +  +  SC +CE    G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y   +     +PGQ LGV G+GG
Sbjct:   57 GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYK-AVKVSNVKPGQWLGVFGIGG 172          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: ADH_STAA3 (Alcohol dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=adh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   37 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            GHE +G V +V  +V   K GD+V +  +  SC +CE    G E  C        S+   G    G  ++ ++V   Y ++ P+ +   A + + CAG+T Y   +     +PGQ LGV G+GG
Sbjct:   57 GHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLC-------RSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYK-AVKVSNVKPGQWLGVFGIGG 172          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: ADH1_CANAL (Alcohol dehydrogenase 1 OS=Candida albicans GN=ADH1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13
Identity = 45/131 (34.35%), Postives = 58/131 (44.27%), Query Frame = 1
Query:   16 TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            T  P+V GHE  G V  +G NV  +K GD  G+  L  SC  CE  QQG E  C          D  G    G +      D     + P    L   AP+LCAG+TVY  +    +   GQ + ++G GG
Sbjct:   61 TKLPLVGGHEGAGVVVGMGENVKGWKIGDFAGIKWLNGSCMSCEFCQQGAEPNC-------GEADLSGYTHDGSFEQYATADAVQAAKIPAGTDLANVAPILCAGVTVYKALKTADLA-AGQWVAISGAGG 183          
BLAST of FC921711 vs. ExPASy Swiss-Prot
Match: ADHP_ECOLI (Alcohol dehydrogenase, propanol-preferring OS=Escherichia coli (strain K12) GN=adhP PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.715e-13
Identity = 39/127 (30.71%), Postives = 58/127 (45.67%), Query Frame = 1
Query:   28 IVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESSQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMIYYGMTEPGQHLGVAGLGG 408
            ++ GHE +G V +VG  V+  K GD+  V      C  CE    G E  C        S+   G    GG ++  +V   Y ++ PD +   A + + CAG+T Y   +      PGQ + + GLGG
Sbjct:   54 VILGHEGIGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNSGNETLC-------RSVKNAGYSVDGGMAEECIVVADYAVKVPDGLDSAAASSITCAGVTTYK-AVKLSKIRPGQWIAIYGLGG 172          
The following BLAST results are available for this feature:
BLAST of FC921711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
ADH_STAAS2.117e-1331.45Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAR2.117e-1331.45Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAN2.117e-1331.45Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAM2.117e-1331.45Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAC2.117e-1331.45Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAB2.117e-1331.45Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAA82.117e-1331.45Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAA32.117e-1331.45Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH1_CANAL3.610e-1334.35Alcohol dehydrogenase 1 OS=Candida albicans GN=ADH... [more]
ADHP_ECOLI4.715e-1330.71Alcohol dehydrogenase, propanol-preferring OS=Esch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32108D12EF RVDevelopN Citrus clementina cDNA clone C32108D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921711 ID=FC921711; Name=FC921711; organism=Citrus clementina; type=EST; length=410bp
AATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCATGAAATTGT
TGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAAAGAGGGTG
ACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAATGTGAAAGC
AGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTTACATATAA
CTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTCAGATCTGA
TTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACATGCCTCTT
GATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTACAGCCCAAT
GATATATTATGGAATGACTGAGCCAGGCCAGCATTTGGGTGTAGCAGGAC
TTGGTGGGCT
back to top