FC921718

Overview
NameFC921718
Unique NameFC921718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CTSB_DICDI (Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.320e-27
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 307
            Y  +SD E IM EI  NGPVE  FTV+EDF  YKSGVY H TG  +GGH VKL+G+GT  +G DY+   NQW  SWG +G F IKRG  +CGI +DVVAGLP
Sbjct:  214 YSFDSD-EAIMQEIVTNGPVEACFTVFEDFLAYKSGVYVHTTGKDLGGHCVKLVGFGTL-NGVDYYAANNQWTTSWGDNGTFLIKRG--DCGISDDVVAGLP 311          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.057e-25
Identity = 47/91 (51.65%), Postives = 66/91 (72.53%), Query Frame = 2
Query:   29 IMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAG 301
            +M  +  +GP++V+F V+ DF +Y+SGVY+H  G + GGHAV+++G+GT DDG DYWI+ N W   WG DGYF++ RG N+C IEE   AG
Sbjct:  206 MMKALSTSGPLQVAFLVHSDFMYYESGVYQHTYGYMEGGHAVEMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRMIRGINDCSIEEQAYAG 296          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATB1_GIALA (Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 3.760e-23
Identity = 44/91 (48.35%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   29 IMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDV-MGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 298
            IM  +   GP++    VY D ++Y+SGVYKH  G + +G HA++++G+GT+DDG DYWI+ N W   WG +GYF+I RG NEC IE+++ A
Sbjct:  209 IMGMLVAGGPLQTMIVVYADLSYYESGVYKHTYGTINLGFHALEIVGYGTTDDGTDYWIIKNSWGPDWGENGYFRIVRGVNECRIEDEIYA 299          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: TINAG_HUMAN (Tubulointerstitial nephritis antigen OS=Homo sapiens GN=TINAG PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 8.376e-23
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGD--------VMGGHAVKLIGWGT----SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 298
            YR++S+  +IM EI +NGPV+    V EDF HYK+G+Y+H+T           +  HAVKL GWGT        E +WI AN W +SWG +GYF+I RG NE  IE+ ++A
Sbjct:  355 YRVSSNETEIMKEIMQNGPVQAIMQVREDFFHYKTGIYRHVTSTNKESEKYRKLQTHAVKLTGWGTLRGAQGQKEKFWIAANSWGKSWGENGYFRILRGVNESDIEKLIIA 465          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: TINAG_BOVIN (Tubulointerstitial nephritis antigen OS=Bos taurus GN=TINAG PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.866e-22
Identity = 55/127 (43.31%), Postives = 75/127 (59.06%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGD--------VMGGHAVKLIGWGT----SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEITSAD 346
            YR++S+  +IM EI +NGPV+    V+EDF +YK+G+Y+HIT              HAVKL GWGT        E +WI AN W +SWG +GYF+I RG NE  IE+ ++A          ++TSAD
Sbjct:  355 YRVSSNETEIMREIMQNGPVQAIMQVHEDFFNYKTGIYRHITSTNEDSEKYRKFRTHAVKLTGWGTLRGAQGQKEKFWIAANSWGKSWGENGYFRILRGVNESDIEKLIIAAW-------GQLTSAD 474          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATC_PONAB (Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.002e-21
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   38 EIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 316
            E+  +GP+ V+F VY+DF HYK G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W   WG DGYF+I+RG++EC IE   VA  P  K
Sbjct:  363 ELVHHGPMAVAFEVYDDFLHYKKGIYHH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGEDGYFRIRRGTDECAIESIAVAATPIPK 462          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATC_MACFA (Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=CTSC PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.002e-21
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 2
Query:   38 EIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 316
            E+  +GP+ V+F VY+DF HY++G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W  SWG DGYF+I+RG++EC IE   VA  P  K
Sbjct:  363 ELVYHGPLAVAFEVYDDFLHYQNGIYHH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTSWGEDGYFRIRRGTDECAIESIAVAATPIPK 462          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATC_CANFA (Dipeptidyl-peptidase 1 (Fragment) OS=Canis familiaris GN=CTSC PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.746e-20
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 2
Query:   38 EIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 316
            E+ ++GP+ V+F VY+DF HY+ G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W   WG DGYF+I+RG++EC IE   VA  P  K
Sbjct:  335 ELVRHGPMAVAFEVYDDFFHYQKGIYYH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGSRWGEDGYFRIRRGTDECAIESIAVAATPIPK 434          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATC_HUMAN (Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.281e-20
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   38 EIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 316
            E+  +GP+ V+F VY+DF HYK G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W   WG +GYF+I+RG++EC IE   VA  P  K
Sbjct:  363 ELVHHGPMAVAFEVYDDFLHYKKGIYHH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPK 462          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: YCF2E_CAEEL (Uncharacterized peptidase C1-like protein F26E4.3 OS=Caenorhabditis elegans GN=F26E4.3 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 5.081e-20
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = 2
Query:    2 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKH--------ITGDVMGGHAVKLIGWGTSDDGED---YWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 295
            Y+++S  EDI  E+  NGPV+ +F V+EDF  Y  GVY+H         +    G H+V+++GWG          YW+ AN W   WG DGYFK+ RG N C IE  V+
Sbjct:  318 YKVSSREEDIQTELMTNGPVQATFVVHEDFFMYAGGVYQHSDLAAQKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQWGEDGYFKVLRGENHCEIESFVI 426          
The following BLAST results are available for this feature:
BLAST of FC921718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CTSB_DICDI7.320e-2760.78Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE... [more]
CATB2_GIALA1.057e-2551.65Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]
CATB1_GIALA3.760e-2348.35Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=... [more]
TINAG_HUMAN8.376e-2345.95Tubulointerstitial nephritis antigen OS=Homo sapie... [more]
TINAG_BOVIN1.866e-2243.31Tubulointerstitial nephritis antigen OS=Bos taurus... [more]
CATC_PONAB6.002e-2148.51Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=... [more]
CATC_MACFA6.002e-2148.51Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=C... [more]
CATC_CANFA1.746e-2047.52Dipeptidyl-peptidase 1 (Fragment) OS=Canis familia... [more]
CATC_HUMAN2.281e-2047.52Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=... [more]
YCF2E_CAEEL5.081e-2041.28Uncharacterized peptidase C1-like protein F26E4.3 ... [more]

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Properties
Property NameValue
Genbank descriptionC32108E07EF RVDevelopN Citrus clementina cDNA clone C32108E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921718 ID=FC921718; Name=FC921718; organism=Citrus clementina; type=EST; length=506bp
ATATAGAATCAATTCTGATCCAGAGGACATAATGGCAGAAATTTACAAGA
ATGGACCAGTTGAAGTTTCCTTCACAGTTTATGAGGATTTTGCTCACTAC
AAATCTGGGGTCTACAAACACATCACAGGCGATGTAATGGGGGGTCATGC
TGTTAAGCTTATTGGTTGGGGAACTAGTGATGATGGCGAGGATTACTGGA
TTCTCGCTAATCAGTGGAATAGAAGCTGGGGTGCGGATGGTTACTTCAAG
ATTAAAAGAGGATCAAATGAGTGTGGTATTGAAGAGGATGTGGTTGCTGG
TTTGCCTTCATCCAAAAATCTTGTCAAAGAGATTACAAGTGCAGATATGT
TTGAGGATGCTTCAGCTTGAGAGCAGACTTTGCTATACCTTCATGTTGTT
ATTTATATATCAAATGTGTAGCTATAGGGGTGTATCGTTGAACCTAAGCT
ATCAAGGCATGAAATGGGAAGCTCCCGTCTTGCAAAANAAAAAAAAAAAA
AAAAAA
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