FC921718

Overview
NameFC921718
Unique NameFC921718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.986e-12
Identity = 35/78 (44.87%), Postives = 44/78 (56.41%), Query Frame = 2
Query:   56 PVEVSFTVYEDFAHYKSGVY--KHITGDVMG-GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 280
            PV ++F V   F  YKSGVY   H     M   HAV  +G+G  +DG  YW++ N W   WG  GYFK++ G N CGI
Sbjct:  272 PVSIAFEVIHSFRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGV-EDGVPYWLIKNSWGADWGDKGYFKMEMGKNMCGI 348          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.900e-12
Identity = 36/81 (44.44%), Postives = 46/81 (56.79%), Query Frame = 2
Query:   56 PVEVSFTVYEDFAHYKSGVYKHITGDVMG------GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 280
            PV V+F V   F  YKSGVY   T D  G       HAV  +G+G  ++G  YW++ N W   WG +GYFK++ G N CGI
Sbjct:  276 PVSVAFQVINGFRMYKSGVY---TSDHCGTSPMDVNHAVLAVGYGV-ENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCGI 352          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.652e-12
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 2
Query:   56 PVEVSFTVYEDFAHYKSGVYKHITGDVMG------GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 280
            PV V+F V + F  YKSGVY   T D  G       HAV  +G+G  ++G  YW++ N W   WG +GYFK++ G N C I
Sbjct:  275 PVSVAFQVIDGFRQYKSGVY---TSDHCGTTPDDVNHAVLAVGYGV-ENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCAI 351          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 2
Query:   17 DPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 298
            D   ++  +YKNGP+ V+     D   Y+SG+   +  D    HAV L+G+G  +D   YWI  N W  +WG +GYF+ +R  N CG+  +  A
Sbjct:  242 DERKLLELLYKNGPIAVAIDCV-DIIDYRSGIAT-VCNDNGLNHAVLLVGYGIEND-TPYWIFKNSWGSNWGENGYFRARRNINACGMLNEFAA 332          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 2
Query:   17 DPEDIMAEIYKNGPVEVSFTV-YEDFAHYKSGVYKHITGDVMG-GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRG-SNECGI 280
            D E +   +   GPV V+    +E F  Y  GVY     D     H V ++G+GT + G DYW++ N W  +WG  GY K+ R  +N+CGI
Sbjct:  240 DEEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHGVLVVGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARNQNNQCGI 330          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.482e-11
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 2
Query:   50 NGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 280
            NGP+ V+  V  D  +YK+G+      +    HAV L+G+G  +D   YWIL N W   WG +GYF+++R  N CG+
Sbjct:  249 NGPISVAIDV-SDLINYKAGIADICENNEGLNHAVLLVGYGVKND-VPYWILKNSWGAEWGEEGYFRVQRDKNSCGM 323          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.482e-11
Identity = 33/81 (40.74%), Postives = 45/81 (55.56%), Query Frame = 2
Query:   56 PVEVSFTVYEDFAHYKSGVYKHITGDVMGG------HAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGI 280
            PV V+F V  +F  YK GV+   T +  G       HAV  +G+G  DD   YW++ N W   WG +GYFK++ G N CG+
Sbjct:  272 PVSVAFEVVHEFRFYKKGVF---TSNTCGNTPMDVNHAVLAVGYGVEDD-VPYWLIKNSWGGEWGDNGYFKMEMGKNMCGV 348          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 34/104 (32.69%), Postives = 53/104 (50.96%), Query Frame = 2
Query:   56 PVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNE----CGIEEDVVAGLPSSKNLVKEITSADMFE 355
            P+ V  +   + + YKSGVYK    ++ G H V ++G+GTS D  DYW++ N W   WG  GY +++R  +E    C +   V    P   N    + S  +F+
Sbjct:  261 PISVMISA-ANMSDYKSGVYKGACSNLWGDHNVLIVGYGTSSDEGDYWLIRNSWGPEWGEGGYLRLQRNFHEPTGKCAVA--VAPVYPIKSNSSSHLLSPSVFK 361          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 33/97 (34.02%), Postives = 51/97 (52.58%), Query Frame = 2
Query:    8 INSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 298
            I  + E++  E+   GP+ ++       + Y  G+  H   ++   HAV L+G+GT + G  YW L N W   WG DGYF++KR  N CG+   + A
Sbjct:  239 IFQNEENLKKELITMGPIAMAIDA-ASISTYSKGII-HFCENLGLNHAVLLVGYGT-EGGVSYWTLKNSWGSDWGEDGYFRVKRNINACGLNNQLAA 332          
BLAST of FC921718 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 2
Query:   53 GPVEVSFTV-YEDFAHYKSGVYKHITGDVMG-GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRG-SNECGI 280
            GPV V+    +E F  Y  GVY     D     H V ++G+GT + GEDYW++ N W  +WG  G+ K+ R   N+CGI
Sbjct:  284 GPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRNKENQCGI 362          
The following BLAST results are available for this feature:
BLAST of FC921718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ALEU_ARATH2.986e-1244.87Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
ORYC_ORYSJ3.900e-1244.44Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
ALEU_HORVU6.652e-1243.21Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATV_NPVST1.135e-1136.17Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CATL_SARPE1.135e-1137.36Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
CATV_GVCP1.482e-1140.26Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
ALEUL_ARATH1.482e-1140.74Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CPR2_ARATH2.528e-1132.69Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CATV_NPVAH2.528e-1134.02Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CATL_DROME2.528e-1140.51Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC32108E07EF RVDevelopN Citrus clementina cDNA clone C32108E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921718 ID=FC921718; Name=FC921718; organism=Citrus clementina; type=EST; length=506bp
ATATAGAATCAATTCTGATCCAGAGGACATAATGGCAGAAATTTACAAGA
ATGGACCAGTTGAAGTTTCCTTCACAGTTTATGAGGATTTTGCTCACTAC
AAATCTGGGGTCTACAAACACATCACAGGCGATGTAATGGGGGGTCATGC
TGTTAAGCTTATTGGTTGGGGAACTAGTGATGATGGCGAGGATTACTGGA
TTCTCGCTAATCAGTGGAATAGAAGCTGGGGTGCGGATGGTTACTTCAAG
ATTAAAAGAGGATCAAATGAGTGTGGTATTGAAGAGGATGTGGTTGCTGG
TTTGCCTTCATCCAAAAATCTTGTCAAAGAGATTACAAGTGCAGATATGT
TTGAGGATGCTTCAGCTTGAGAGCAGACTTTGCTATACCTTCATGTTGTT
ATTTATATATCAAATGTGTAGCTATAGGGGTGTATCGTTGAACCTAAGCT
ATCAAGGCATGAAATGGGAAGCTCCCGTCTTGCAAAANAAAAAAAAAAAA
AAAAAA
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