FC921744

Overview
NameFC921744
Unique NameFC921744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERY 393
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERY 393
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERY 393
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERY 393
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERY 393
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F++  +LF+Y STD  M+R+L +Y  Y
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD--MDRVLLKYTEY 72          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 37/70 (52.86%), Postives = 57/70 (81.43%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERY 384
            MGR ++ +++I N+ NRQ TF+KR++GL+KKA E+S+LCD E+A+IVFS+  KLF+YS+   M+++L RY
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRD-MDKLLIRY 71          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 38/73 (52.05%), Postives = 60/73 (82.19%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERY 393
            MGR ++Q+ RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD ++ALI+F++  +LF+Y++ S M+R+L +Y  Y
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYAS-SDMDRVLLKYTEY 72          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  178 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY---STDSCMERILERYERYCYAERQLQANEIEPN 438
            GR ++++ +++N+ N QVTFSKRRSGL KKA E+  LC AEVA++VFS   K+F +   + DS ++R +       +    +Q  E   N
Sbjct:    7 GRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRN 96          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 48/157 (30.57%), Postives = 85/157 (54.14%), Query Frame = 1
Query:  172 NMGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY---STDSCMERILERYERYCYAERQLQ---ANEIEPNGNWT-----LEYSKLKA------RMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLI 591
            ++GR ++ + +I+ + +RQVTFSKRR+GL KKA E+  LC AE+ +IVFS   K F +   S +S ++R + R        +QLQ   A   E N   T     +E  K K       R E ++R+  ++  + + ++++ +LQ ++  ++   K +
Sbjct:   61 SIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217          
The following BLAST results are available for this feature:
BLAST of FC921744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MEF2C_PIG6.287e-1655.41Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2C_MOUSE6.287e-1655.41Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN6.287e-1655.41Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN6.287e-1655.41Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2B_HUMAN6.287e-1655.41Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
SRFC_DICDI1.829e-1552.86Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2B_MOUSE1.829e-1552.05Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
AGL62_ARATH1.603e-1140.00Agamous-like MADS-box protein AGL62 OS=Arabidopsis... [more]
AGL61_ARATH2.093e-1130.57Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32108H02EF RVDevelopN Citrus clementina cDNA clone C32108H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921744 ID=FC921744; Name=FC921744; organism=Citrus clementina; type=EST; length=678bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATATCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTATAGCTAATTAAGGGTGTTCTAACTAGAGTGGAGAATTGCTGGT
GATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCTGAA
GAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGAGAAGGT
CTGGTTTATTGAAAAAGGCCCATGAGATCTCTGTGCTTTGTGACGCTGAA
GTTGCTTTGATCGTCTTCTCCGCTAAAGGCAAGCTCTTTGAATACTCTAC
TGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTTATG
CGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGGACA
TTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAATCA
AAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGCTTC
AAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCAAGA
AAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGACAG
TTATTGAAAAGAGCAAACACTTGCTTGC
back to top