FC921744

Overview
NameFC921744
Unique NameFC921744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 89/160 (55.62%), Postives = 123/160 (76.88%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYA--ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ +   M + LE+Y++  YA  E  +Q  E E       EY KLKAR+E LQR Q++ +GEDL  L +KEL+S+E+Q+DS LK +R+ + + ++  ++ELQ+K+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKE 160          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 91/159 (57.23%), Postives = 119/159 (74.84%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQAN-EIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRG+V+LKRIENKI+RQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +G+LFE+ST SCM + LERY    Y     +A+  +E   +   EY KLK R+E LQ  Q++ +GEDL  LSLKEL+ +E QI+  L  IRS KNQ +L  + EL++K+
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKE 159          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 91/159 (57.23%), Postives = 119/159 (74.84%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQAN-EIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRG+V+LKRIENKI+RQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +G+LFE+ST SCM + LERY    Y     +A+  +E   +   EY KLK R+E LQ  Q++ +GEDL  LSLKEL+ +E QI+  L  IRS KNQ +L  + EL++K+
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKE 159          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.029e-42
Identity = 88/158 (55.70%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M + L+RY++  Y   ++     +   N   EY KLK R E LQR Q++ +GEDL  L+ KEL+ +E+Q+D  LK +RS K Q ML  +S+LQ K+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKE 158          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.029e-42
Identity = 94/170 (55.29%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWT------------LEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRGRV+LKR+ENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALIVFS +GKL+E+ + S M + LERY++  Y           P GN T             EY KLKAR E LQR+Q++ MGEDL  LS K+L+++E+Q+DS LK IRS + Q ML  + +LQ+K+
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYG---------APEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKE 161          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.293e-42
Identity = 92/165 (55.76%), Postives = 120/165 (72.73%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYA-------ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M R LERY++  Y         R+  A E+        EY KLK R + LQR Q++ +GEDL  LS KEL+S+E+Q+DS LK IR+ + Q ML  +++LQ K+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQ----QEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKE 161          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.293e-42
Identity = 86/159 (54.09%), Postives = 122/159 (76.73%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCY-AERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRGRV+LKRIENKINRQVTFSKRR+GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ + + + + LE+Y   CY A+    A     + +W  E S+LK ++E LQR+Q+H +GEDL  LS+KELQ +E+Q++  L   R RK Q+M++ + +L++K+
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS-AGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKE 158          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.671e-42
Identity = 88/158 (55.70%), Postives = 116/158 (73.42%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV+LIVFS +GKL+E+ + S M + LERY++  Y   ++     +   N   EY KLK R E LQR Q++ +GEDL  L+ KEL+ +E+Q+D  LK +R  K Q ML  +S+LQ K+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKE 158          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.138e-41
Identity = 91/165 (55.15%), Postives = 119/165 (72.12%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYA-------ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRGRV+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M R LERY++  Y         R+  A E+        EY KLK R + LQR Q++ +GEDL  LS KEL+ +E+Q+DS LK IR+ + Q ML  +++LQ K+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQ----QEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKE 161          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.535e-41
Identity = 88/159 (55.35%), Postives = 119/159 (74.84%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEP-NGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRGRV+LKRIE KINRQVTF+KRR+GLLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M + LERY++  Y   +   +  E    +   EY KLK R E LQR+Q++ +GEDL  L+ KEL+S+E+Q+D  LK IRS + QLML  +++ Q+K+
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKE 159          
The following BLAST results are available for this feature:
BLAST of FC921744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MADS7_ORYSI7.880e-4355.63MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS5_ORYSJ7.880e-4357.23MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI7.880e-4357.23MADS-box transcription factor 5 OS=Oryza sativa su... [more]
SEP1_ARATH1.029e-4255.70Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MTF1_PEA1.029e-4255.29MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP3_ARATH2.293e-4255.76Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MAD17_ORYSJ2.293e-4254.09MADS-box transcription factor 17 OS=Oryza sativa s... [more]
SEP2_ARATH6.671e-4255.70Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
AGL9_SINAL1.138e-4155.15Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_SOLLC2.535e-4155.35Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionC32108H02EF RVDevelopN Citrus clementina cDNA clone C32108H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921744 ID=FC921744; Name=FC921744; organism=Citrus clementina; type=EST; length=678bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATATCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTATAGCTAATTAAGGGTGTTCTAACTAGAGTGGAGAATTGCTGGT
GATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCTGAA
GAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGAGAAGGT
CTGGTTTATTGAAAAAGGCCCATGAGATCTCTGTGCTTTGTGACGCTGAA
GTTGCTTTGATCGTCTTCTCCGCTAAAGGCAAGCTCTTTGAATACTCTAC
TGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTTATG
CGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGGACA
TTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAATCA
AAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGCTTC
AAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCAAGA
AAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGACAG
TTATTGAAAAGAGCAAACACTTGCTTGC
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