FC921744

Overview
NameFC921744
Unique NameFC921744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.546e-35
Identity = 76/159 (47.80%), Postives = 117/159 (73.58%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL+VFS +G+L+EY+ +S ++  +ERY++ C ++     +  E N   +  E SKL+A++  L    ++ MGE LA + LKEL+++EQ+I+ G+  IRS+KN+L+   I  +QK++
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNS-VKATIERYKKAC-SDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKRE 173          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.032e-34
Identity = 73/159 (45.91%), Postives = 116/159 (72.96%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFS +G+L+EY+ +S ++  +ERY++ C  +    ++  E N   +  E SKL+  +  +Q+N ++ MGE L  L++++L+ +E +++ G+  IRS+KN+L+   I  +QKK+
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNS-VKGTIERYKKAC-TDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKE 173          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.001e-34
Identity = 70/158 (44.30%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFS +G+L+EY+ ++ +   +ERY++ C         +      +  E +KL+ +++ +Q + ++ MG+ L+ LS+KEL+ VE +++  +  IRS+K++L+L  I   QK++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNN-IRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKRE 157          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 70/159 (44.03%), Postives = 116/159 (72.96%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FS +G+L+EY+ +S +   +ERY++ C ++     +  E N   +  E SKL+ ++  +Q + +H +GE L  L+ KEL+++E +++ G+  +RS+KN+L++  I  +QK++
Sbjct:   16 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNS-VRGTIERYKKAC-SDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKRE 172          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.490e-33
Identity = 68/161 (42.24%), Postives = 117/161 (72.67%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN--WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDS 651
            MGRG++++KRIENK +RQVTF KRR+GLLKKA+E+++LCDAE+ALIVFS++G+L+E+S  +     +ERY++   A     A  I+ N +  +  E +K++ +++ LQ   +H +GE + +++ KEL+S+E +++ G+  IRS+K++L+   I  +QK+++
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKK-ASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREA 160          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.945e-33
Identity = 70/159 (44.03%), Postives = 113/159 (71.07%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDS 651
            MGRG++ ++RI+N  +RQVTFSKRR+G+ KKA E+++LCDAEV L++FS+ G+L+EYS+ S M+ +++RY +    E+Q  AN       W  E + L+ ++  LQ N +  MGEDL+ L++KELQS+E Q++  L+ +R++K+ +++  I EL +K S
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTS-MKSVIDRYGK-SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGS 157          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.655e-33
Identity = 70/164 (42.68%), Postives = 112/164 (68.29%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDSY*KEQ 666
            MGRG++++KRIEN  NRQVTFSKRR GLLKKA+E++VLCDA V +++FS+ GK+FEY + +C  R  E  E+Y +A       EI  +    LE +++K  ME L+   + + G+DL+ L+L ++  +EQQ++  +  +R+RK+QL+ Q +  L++K+   ++Q
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLR--ELIEQYQHATNS-HFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQ 161          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.647e-32
Identity = 68/159 (42.77%), Postives = 114/159 (71.70%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            +GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVAL++FS +G+L+EY+ +S +   +ERY++ C ++        E N   +  E SKL+ ++  +Q   +H +GE L  L+ KEL+++E +++ G+  +RS+K+++++  I  +QK++
Sbjct:   16 IGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNS-VRGTIERYKKAC-SDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKRE 172          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.669e-32
Identity = 73/168 (43.45%), Postives = 114/168 (67.86%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQL--QANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDSY*KEQTL 672
            MGRG++ ++RI++  +RQVTFSKRR GL+KKA E+++LCDAEV LI+FS+ GKL+++++ S M+ +++RY +    ++QL   A+E++    W  E + L+  +  LQ N +  MGE L  LS+ EL S+E QI+  L+ IR RK QL+ Q I EL +K +   ++ L
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSS-MKSVIDRYNKSKIEQQQLLNPASEVK---FWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENL 164          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 71/158 (44.94%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  178 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFS++G+L+EYS +S ++  +ERY++   ++     +  E N   +  E +KL+ ++  +Q + +  MGE +  +S KEL+++E ++D  +  IRS+KN+L+   I  +QK++
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS-VKGTIERYKK-AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKRE 173          
The following BLAST results are available for this feature:
BLAST of FC921744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AG_SOLLC3.546e-3547.80Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PANGI1.032e-3445.91Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AGL11_ARATH3.001e-3444.30Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AGL1_ARATH8.733e-3444.03Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MAD21_ORYSJ1.490e-3342.24MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD27_ORYSJ1.945e-3344.03MADS-box transcription factor 27 OS=Oryza sativa s... [more]
M17_MAIZE9.655e-3342.68MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
AGL5_ARATH1.647e-3242.77Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL21_ARATH3.669e-3243.45Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
AG_BRANA8.174e-3244.94Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]

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Properties
Property NameValue
Genbank descriptionC32108H02EF RVDevelopN Citrus clementina cDNA clone C32108H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921744 ID=FC921744; Name=FC921744; organism=Citrus clementina; type=EST; length=678bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATATCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTATAGCTAATTAAGGGTGTTCTAACTAGAGTGGAGAATTGCTGGT
GATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCTGAA
GAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGAGAAGGT
CTGGTTTATTGAAAAAGGCCCATGAGATCTCTGTGCTTTGTGACGCTGAA
GTTGCTTTGATCGTCTTCTCCGCTAAAGGCAAGCTCTTTGAATACTCTAC
TGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTTATG
CGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGGACA
TTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAATCA
AAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGCTTC
AAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCAAGA
AAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGACAG
TTATTGAAAAGAGCAAACACTTGCTTGC
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