FC921744

Overview
NameFC921744
Unique NameFC921744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.394e-31
Identity = 71/160 (44.38%), Postives = 115/160 (71.88%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNG-NWTLEYSKLKARMEVLQR-NQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFS++G+L+EY+ +S ++  +ERY++   ++        E N  ++  E SKL+ ++  LQ  N +  +G+ +  +SL++L+ VE +++ G+  IR+RKN+L+   +  +QK++
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VKSTVERYKK-ANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKRE 158          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 70/158 (44.30%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  178 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            GRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEVALIVFS++G+L+EYS +S ++  +ERY++   ++     +  E N   +  E +KL+ ++  +Q + +  MGE +  +S KEL+++E +++  +  IRS+KN+L+   I  +QK++
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS-VKGTIERYKK-AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKRE 173          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 77/158 (48.73%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRG++++KRIEN  +RQVTFSKRR+GLLKKAHE+SVLCDAEVA+IVFS  GKLFE+S+ S M++ L RY  Y  +      N    N     E   LK  + +LQ    H  G+ L  LSLKELQ +E+Q++  L  +R RK  L+ + + E + K+
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTS-MKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKE 157          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.378e-31
Identity = 71/158 (44.94%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  181 RGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNG-NWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDS 651
            RG++++KRIEN  NRQVTF KRRSGLLKKA+E+SVLCDAEVAL+VFS++G+L+EYS +S  E I ERY++   ++    +   E N  ++  E +KLK ++  LQ + +  +G+++  ++ +EL+ +E ++D GL  IR+RKN+L+   I  +Q++++
Sbjct:   45 RGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETI-ERYKK-ANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRET 200          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.378e-31
Identity = 66/165 (40.00%), Postives = 111/165 (67.27%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSC-MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDSY*KEQ 666
            MGRG++++KRIEN  NRQVTFSKRR GLLKKA+E++VLCDA V +++FS+ GK+FEY + +C +  ++E Y+            EI  +    +E ++++  ME L    + F G+DL++L+L ++  +EQQ++  +  +R+RK+QL+ Q +  L++K+   ++Q
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQ----TVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQ 161          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.919e-31
Identity = 69/158 (43.67%), Postives = 109/158 (68.99%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            M RG+ Q+KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEV+LI+FS KGKL+E+++ S M+  ++RY R+       +    E   +   E + +  ++E L+ +++  +GE +   S++ELQ +EQQ++  +K IR+RK Q+  + I +L++K+
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFAS-SNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKE 157          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.180e-30
Identity = 69/159 (43.40%), Postives = 106/159 (66.67%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDS 651
            MGRG++ ++RI+N  +RQVTFSKRR+GLLKKA E+S+LCDAEV L+VFS+ G+L+E+S+ + M+ +++RY      E  L  N       W  E + L+ ++  LQ + K  MGE+L+ L +++LQ +E +++  L+ IR RK+ L+   I EL  K S
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTN-MKTVIDRYTN--AKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEIEELHVKGS 156          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.180e-30
Identity = 65/159 (40.88%), Postives = 110/159 (69.18%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDS 651
            MGRG++ +KRI+N +NRQVTFSKRR GL+KKA E+++LCDA+V LIVFS  G+L+++S+ S M+ I+ERY+     E     N +     W  E + L+ +++ L  N +  +GE++++ ++++LQ ++ Q++  L  IR++K+QL+ + I +L +K S
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSS-MKSIIERYQE-AGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGS 157          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.542e-30
Identity = 71/162 (43.83%), Postives = 109/162 (67.28%), Query Frame = 1
Query:  166 IVNMGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            ++ MGRG++++KRIENK +RQVTFSKRR+GLLKK HE+SVLCDA++ LI+FS+KGKLFEY S    M +I+ RY +   A   ++ N ++       E +K++     LQ + + + G+DL+    +EL  +E+Q++  L  IR+RK +LM Q +  L+K +
Sbjct:    1 MIIMGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQLYD----EVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTE 158          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.858e-30
Identity = 68/160 (42.50%), Postives = 112/160 (70.00%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYC--YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            M RGR +LKRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALIVFS +G+L+E+++   +++ ++RY+ Y   +   +    +I+   + TL  +K   ++E L  +++  +GE+L   S++EL+ +E +++  L  IR +K +L+ Q I++L++K+
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAK---KLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKE 157          
The following BLAST results are available for this feature:
BLAST of FC921744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MADS3_ORYSJ1.394e-3144.38MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AG_ARATH1.821e-3144.30Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL15_BRANA1.821e-3148.73Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
MAD58_ORYSJ2.378e-3144.94MADS-box transcription factor 58 OS=Oryza sativa s... [more]
MAD29_ORYSJ2.378e-3140.00MADS-box transcription factor 29 OS=Oryza sativa s... [more]
SOC1_ARATH6.919e-3143.67MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD57_ORYSJ1.180e-3043.40MADS-box transcription factor 57 OS=Oryza sativa s... [more]
MAD25_ORYSJ1.180e-3040.88MADS-box transcription factor 25 OS=Oryza sativa s... [more]
FBP24_PETHY1.542e-3043.83MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD56_ORYSJ5.858e-3042.50MADS-box transcription factor 56 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC32108H02EF RVDevelopN Citrus clementina cDNA clone C32108H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921744 ID=FC921744; Name=FC921744; organism=Citrus clementina; type=EST; length=678bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATATCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTATAGCTAATTAAGGGTGTTCTAACTAGAGTGGAGAATTGCTGGT
GATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCTGAA
GAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGAGAAGGT
CTGGTTTATTGAAAAAGGCCCATGAGATCTCTGTGCTTTGTGACGCTGAA
GTTGCTTTGATCGTCTTCTCCGCTAAAGGCAAGCTCTTTGAATACTCTAC
TGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTTATG
CGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGGACA
TTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAATCA
AAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGCTTC
AAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCAAGA
AAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGACAG
TTATTGAAAAGAGCAAACACTTGCTTGC
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