FC921744

Overview
NameFC921744
Unique NameFC921744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.226e-29
Identity = 69/157 (43.95%), Postives = 105/157 (66.88%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKK 645
            MGRGRV+LK+IEN  NRQVTFSKRR GLLKKA+E+++LCDA++ +IVFS  GK++EYS+     RI   ++RY  A    +  E++       E +++K     L+   + +MG+DLA L+L+++ ++EQQI+  L  +R RK QL+ Q + E+  +
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPW--RIANIFDRYLKAP-STRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMHSR 154          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.226e-29
Identity = 66/157 (42.04%), Postives = 104/157 (66.24%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKK 645
            MGRG++++KRI+N  +RQVTFSKRRSGL KKA E+S+LCDAEV L+VFS+  +L+++++ S M+ I+ERY        Q   N       W  E + L+ ++  LQ   +  +G+ L+ L +++LQ++E +++  LK IR RK+ +M+  I EL +K
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSS-MKSIIERYNETKEDPHQTM-NASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMDQIQELSRK 155          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.226e-29
Identity = 75/158 (47.47%), Postives = 102/158 (64.56%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRG++++KRIEN  +RQVTFSKRRSGLLKKA E+SVLCDAEVA+IVFS  GKLFEYS+   M++ L RY  +    +   A++ E +     E   LK ++  LQ       G+ L  L+ KELQS+EQQ+   L  +R RK +L+   + E + K+
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTG-MKQTLSRYGNH----QSSSASKAEED---CAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQLEESRLKE 150          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.907e-29
Identity = 67/160 (41.88%), Postives = 112/160 (70.00%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYC--YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            M RGR +LKRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALIVFS +G+L+E+++   +++ ++RY+ Y   +   +    +I+   + TL  +K   ++E L  +++  +GE+L   S++EL+ +E +++  L  IR +K +L+ + I++L++K+
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAK---KLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKE 157          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.797e-29
Identity = 68/161 (42.24%), Postives = 105/161 (65.22%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDS-CMERILERY--ERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            MGRG++++KRIEN  +RQVTFSKRRSGL+KK HE+SVLCDA++ LIVFS KGKL EY T    M++I++RY   +    E + +A     N     E +++K     LQ N + + G+DL+ +  +EL  +E+ +D  L  +R+RK +L+ + +  L++ +
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTE 161          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.959e-29
Identity = 72/163 (44.17%), Postives = 108/163 (66.26%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSK-----LKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            M RG+ ++KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALI+FS +GKL+E+S+ S + + +ERY      ++++Q        N   + SK     L  ++E L+ + +  MGE L   S++ELQ +E Q+D  L  IR++K QL+ +   +L++K+
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERY------QKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKE 157          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 67/164 (40.85%), Postives = 105/164 (64.02%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDSY*KEQ 666
            M R ++Q+K+I+N   RQVTFSKRR GL KKA E+SVLCDA+VALI+FS+ GKLF+YS+ S M++ILER + +     +L    +E        YS+L   +       +   GE+L  L+++ELQ +E+ +++GL  +  RK   +++ I++LQ+K  +  E+
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSS-MKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEE 163          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 69/169 (40.83%), Postives = 105/169 (62.13%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYC-----------YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            M RG++QLKRIEN ++RQVTF KRR+GLLKKA E+SVLCDAE+ +++FS +GKLFE +T   ME ++++Y +              A+ QLQ   ++P      E + LK  +E+LQ+   +  G     ++L+EL  +E+ ++  +  IRS K  +MLQ I  L+ K+
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKD----EINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKE 165          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.352e-28
Identity = 68/165 (41.21%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYC-------YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            M RG+ Q+KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALIVFS +GKL+E+++ S  ++ +ERY  Y          ++ ++  + + +G        L  ++E L+  ++  +GE L + S++EL S+E +++  L  IR RK +L+ + +++L++K+
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASAS-TQKTIERYRTYTKENIGNKTVQQDIEQVKADADG--------LAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKE 156          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.083e-27
Identity = 68/160 (42.50%), Postives = 108/160 (67.50%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTL--EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            M RG+ ++KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVAL++FS + KL+E+S+ S +   +ERY+R     +++  N    + +     E S L  ++E L+ +++  +GE +   S++ELQ +E Q+D  L  IR++K QL+ + I +L+ ++
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSS-IAATIERYQRRI---KEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEE 156          
The following BLAST results are available for this feature:
BLAST of FC921744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD31_ORYSJ2.226e-2943.95MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MAD23_ORYSJ2.226e-2942.04MADS-box transcription factor 23 OS=Oryza sativa s... [more]
AGL15_ARATH2.226e-2947.47Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
MAD56_ORYSI2.907e-2941.88MADS-box transcription factor 56 OS=Oryza sativa s... [more]
DEF21_ANTMA3.797e-2942.24MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
AGL14_ARATH4.959e-2944.17Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
JOIN_SOLLC1.884e-2840.85MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
AGL12_ARATH1.884e-2840.83Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
MAD50_ORYSJ9.352e-2841.21MADS-box transcription factor 50 OS=Oryza sativa s... [more]
AGL19_ARATH2.083e-2742.50Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC32108H02EF RVDevelopN Citrus clementina cDNA clone C32108H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921744 ID=FC921744; Name=FC921744; organism=Citrus clementina; type=EST; length=678bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATATCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTATAGCTAATTAAGGGTGTTCTAACTAGAGTGGAGAATTGCTGGT
GATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCTGAA
GAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGAGAAGGT
CTGGTTTATTGAAAAAGGCCCATGAGATCTCTGTGCTTTGTGACGCTGAA
GTTGCTTTGATCGTCTTCTCCGCTAAAGGCAAGCTCTTTGAATACTCTAC
TGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTTATG
CGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGGACA
TTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAATCA
AAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGCTTC
AAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCAAGA
AAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGACAG
TTATTGAAAAGAGCAAACACTTGCTTGC
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