FC921744

Overview
NameFC921744
Unique NameFC921744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.641e-27
Identity = 63/159 (39.62%), Postives = 105/159 (66.04%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQ--ANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKK 645
            MGRG++ +++I++  +RQVTFSKRR GL+KKA E+++LCDAEV LI+FS   KL+++++ S ++  +ER+      E++L   A+E++    W  E   L+  +  LQ N +   G +L  LS+KELQ++E Q++  L+ IR ++ Q++   I EL +K
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSS-VKSTIERFNTAKMEEQELMNPASEVK---FWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRK 155          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.062e-27
Identity = 65/140 (46.43%), Postives = 94/140 (67.14%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERYCYAERQLQANEI---EPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGL 582
            MGRG++++KRIEN  NRQVTFSKRRSG+LKKA EISVLCDAEV +++FS+ GKL++Y S  + + RILE+Y        Q  + +I   E + + + E  ++K   + +Q   +H  GEDL  L  KEL  +E+ +D+G+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKY--------QTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGI 132          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.917e-27
Identity = 65/147 (44.22%), Postives = 102/147 (69.39%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 615
            MGRG++++KRIEN  NRQVT+SKRR+G+LKKA EISVLCDA V++I+F++ GK+ E+S+ S ++ IL++Y +     R+L   + E   N   E +K+K   + +Q   +H  GED+  L+ +EL  +E  +D+GL  IR+++N L+
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVD-ILDQYHK--LTGRRLWDAKHE---NLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLL 141          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.350e-26
Identity = 63/147 (42.86%), Postives = 102/147 (69.39%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 615
            MGRG++++KRIEN  NRQVT+SKRR+G+LKKA EISVLCDA V++I+F++ GK+ E+S+ S ++ IL++Y +     R L A     + N   E +K+K   + +Q   +H  GED+  L+ +EL  +E  +++GL  IR+++N+++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVD-ILDQYHKLT-GRRLLDAK----HENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVL 141          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.929e-26
Identity = 60/155 (38.71%), Postives = 102/155 (65.81%), Query Frame = 1
Query:  181 RGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKK 645
            R R+ ++RI+N   RQVTFSKRR GL KKA E+S+LCDAEV L+VFSA GKLF++++ S ME+I++RY  +    ++ + ++++  G  +   ++LK  +       +   GE+L  L++++LQ +E+ ++SGL  +   K++ +L  I  L++K
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTS-MEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERK 175          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.702e-26
Identity = 71/169 (42.01%), Postives = 105/169 (62.13%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSK---LKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDSY*KEQTL 672
            M R R ++KRIE+   RQVTFSKRR GL KKA E+SVLCDA+VALIVFS+ GKL  +++ S M  I+++Y  +      L   E +P+ +  LE+SK   L  ++       +   GE+L  LS+ ELQ +E+ +++GL  +   K+Q  ++ ISELQ+K S   E+ +
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSS-MNEIIDKYNTH---SNNLGKAE-QPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENM 164          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.753e-26
Identity = 61/166 (36.75%), Postives = 108/166 (65.06%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEI-EPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLS-LKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDSY*KEQ 666
            MG+G++++KRIE+   RQVTFSKRR+G LKKA+E++VLCDA+V ++VFS KGKLF++ +   +  ++E + RY    R  +  E    +    +E ++L+  ++ L+ + +   GEDL+ +S + EL  ++ Q++S L  + +RK++LM Q + ++++      EQ
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVI--LMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQ 164          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.753e-26
Identity = 62/160 (38.75%), Postives = 105/160 (65.62%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANE-IEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLAD-LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            M RG+VQL+RIEN ++RQVTF KRR+GLLKKA E+S+LC+A++ +I+FSA GKL++ +T   ME ++ERY+     +     ++ ++P      E   LK  + +LQ+  ++  G    + ++++EL ++E+ ++  +  IRS K Q+M+Q I  L+ K+
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDPK----QEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKE 156          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.753e-26
Identity = 62/160 (38.75%), Postives = 105/160 (65.62%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANE-IEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLAD-LSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            M RG+VQL+RIEN ++RQVTF KRR+GLLKKA E+S+LC+A++ +I+FSA GKL++ +T   ME ++ERY+     +     ++ ++P      E   LK  + +LQ+  ++  G    + ++++EL ++E+ ++  +  IRS K Q+M+Q I  L+ K+
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANACGDQRMDPK----QEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKE 156          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.143e-25
Identity = 62/157 (39.49%), Postives = 98/157 (62.42%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKK 645
            M R ++Q+++I+N   RQVTFSKRR GL KKA E+SVLCDA+VALI+FS+ GKLFE+ + S M+ +LER+        +L    +E       +++++   +       +   GE+L  L ++ELQ +E+ +++GL  +   K+  ++  ISELQKK
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSS-MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKK 156          
The following BLAST results are available for this feature:
BLAST of FC921744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL17_ARATH4.641e-2739.62Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
MADS2_ORYSJ6.062e-2746.43MADS-box transcription factor 2 OS=Oryza sativa su... [more]
GLOB_TOBAC7.917e-2744.22Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
FBP1_PETHY1.350e-2642.86Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
MAD47_ORYSJ3.929e-2638.71MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD22_ORYSJ6.702e-2642.01MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD30_ORYSJ8.753e-2636.75MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MAD26_ORYSJ8.753e-2638.75MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI8.753e-2638.75MADS-box transcription factor 26 OS=Oryza sativa s... [more]
SVP_ARATH1.143e-2539.49MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]

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Properties
Property NameValue
Genbank descriptionC32108H02EF RVDevelopN Citrus clementina cDNA clone C32108H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921744 ID=FC921744; Name=FC921744; organism=Citrus clementina; type=EST; length=678bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATATCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTATAGCTAATTAAGGGTGTTCTAACTAGAGTGGAGAATTGCTGGT
GATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCTGAA
GAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGAGAAGGT
CTGGTTTATTGAAAAAGGCCCATGAGATCTCTGTGCTTTGTGACGCTGAA
GTTGCTTTGATCGTCTTCTCCGCTAAAGGCAAGCTCTTTGAATACTCTAC
TGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTTATG
CGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGGACA
TTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAATCA
AAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGCTTC
AAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCAAGA
AAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGACAG
TTATTGAAAAGAGCAAACACTTGCTTGC
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