FC921744

Overview
NameFC921744
Unique NameFC921744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.493e-25
Identity = 65/167 (38.92%), Postives = 104/167 (62.28%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQ----LQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDSY*KE 663
            M RG+VQ++RIEN ++RQVTF KRR GLLKKA E+SVLCDA+V +I+FS++GKL E +T+  M  ++ERY+      +     LQ  ++   G +      L+  +++LQR  +   G    +++L +L ++E+ ++  +  IR+ K Q+M Q I  L+ K+   KE
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGALQRQQVAEQGIFL-----LREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKE 162          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 64/169 (37.87%), Postives = 112/169 (66.27%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDSY*KE--QTLA 675
            MGR +V++KRIENK +RQVTFSKRR+GL++KA ++S+LC++ +A++V S  GKL++ ++   M +I++RYE   +   +L+A ++      T  Y  LK  +E++Q   +     ++ + S+  L S+E+Q+++ L + R+RK +LM+  +  LQK ++  +E  QTLA
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYE--IHHADELEALDLAEK---TRNYLPLKELLEIVQSKLEE---SNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLA 161          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.344e-25
Identity = 61/157 (38.85%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKK 645
            MGRG++++K+IEN+  RQVTFSKRR+GL+KK  E+S+LCDA + LIVFSA GKL E+ ++    R+ +  +RY +       +  +       E   L+     L+   + F G DLA +   EL  +E+Q++  +  +R RKN+LM Q +  L +K
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSE--QNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRK 155          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.344e-25
Identity = 61/149 (40.94%), Postives = 97/149 (65.10%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSC-MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLML 618
            MGRG++++KRIEN  NR VTFSKRR+GL+KKA EI+VLCDA+VALI+F++ GK+ +Y   S  +  +L++Y++    +     +E     N + E  ++K   + LQ   +H  GED+  L+LK L +VE  I+ GL  +R  + ++++
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHE-----NLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILI 144          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.344e-25
Identity = 71/172 (41.28%), Postives = 105/172 (61.05%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSC-MERILERYERYCYAERQLQANEIEPNGNWTLEYSK---LKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQK--KDSY*KEQTL 672
            MGRG++++KRIEN  NRQVT+SKRR+G++KKA E++VLCDA+VA+I+FS+ GK  E+ + S  ++ I +RY++       ++  E   N   TL + K      R E+ QR     MGEDL  L   EL+ +EQ +D+ LK +R RK  ++       +K  K SY   +TL
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYE---NMQRTLSHLKDINRNLRTEIRQR-----MGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEAYETL 164          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25
Identity = 63/164 (38.41%), Postives = 110/164 (67.07%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDSY*KEQ 666
            MGR ++++KRIENK +RQVTFSKRR+GL++KA ++SVLCDA VAL+V SA GKL+ +S+   + +IL+RY +  +A+  L+A + +      L Y    +  E+L+      +G ++ ++S+  L  +E+ +++ L + R++K +LML+ +  L++K+   KE+
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQ-HAD-DLKALDHQSK---ALNYG---SHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEKEKMLKEE 156          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.264e-24
Identity = 63/151 (41.72%), Postives = 94/151 (62.25%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSC------MERILERYERYCYAERQLQANEI---EPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSR 600
            MGRG++++KRIEN  NRQVTFSKRR+G+LKKA EI VLCDAEV +++FS+ GKL +Y T         + RILE+Y        Q  + +I   E + + + E  ++K   + +Q   +H  GEDL  L  KEL ++E+ +++G   +R +
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKY--------QTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK 143          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 62/165 (37.58%), Postives = 102/165 (61.82%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEV-------LQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKK 645
            M RG++Q+KRIEN+ NRQVT+SKRR+GL KKAHE+SVLCDA+V++I+ S+  KL EY S  +  +++ ++Y++    +             W+  Y K++  ++        L+R  +  MGE L DL  +++ ++ + +D+ LKLIR RK +++   I   +KK
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDL------------WSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKK 153          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24
Identity = 60/165 (36.36%), Postives = 102/165 (61.82%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDS-CMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHF-------MGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKK 645
            M RG++Q+KRIEN+ NRQVT+SKRR+GL KKA+E++VLCDA+V++I+ S+ GKL E+ + S   +++ + Y++    +             W   Y K++ ++  L+   ++        MGE L DL+ ++L+ + + +D+ LKLIR RK +++   I   +KK
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDL------------WNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKK 153          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24
Identity = 62/166 (37.35%), Postives = 104/166 (62.65%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKL-KARMEVLQRNQ------KHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKD 648
            M RG++Q+KRIEN+ NRQVT+SKRR+GL KKAHE++VLCDA V++I+FS+  KL EY S ++  + I++ Y+             I     W  +Y ++ + + ++L+ N+      K  +GE L +L ++EL+ +E ++++  KL+R RK + +   I   +KK+
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQ------------TISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKN 154          
The following BLAST results are available for this feature:
BLAST of FC921744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD33_ORYSJ1.493e-2538.92MADS-box transcription factor 33 OS=Oryza sativa s... [more]
AGL31_ARATH3.326e-2537.87Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
TT16_ARATH4.344e-2538.85Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
PIST_ARATH4.344e-2540.94Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD16_ORYSJ4.344e-2541.28MADS-box transcription factor 16 OS=Oryza sativa s... [more]
FLC_ARATH7.410e-2538.41MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
MADS4_ORYSJ1.264e-2441.72MADS-box transcription factor 4 OS=Oryza sativa su... [more]
DEFA_ANTMA2.156e-2437.58Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MADS1_PETHY6.273e-2436.36Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
AP3_ARATH6.273e-2437.35Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC32108H02EF RVDevelopN Citrus clementina cDNA clone C32108H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921744 ID=FC921744; Name=FC921744; organism=Citrus clementina; type=EST; length=678bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATATCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTATAGCTAATTAAGGGTGTTCTAACTAGAGTGGAGAATTGCTGGT
GATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCTGAA
GAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGAGAAGGT
CTGGTTTATTGAAAAAGGCCCATGAGATCTCTGTGCTTTGTGACGCTGAA
GTTGCTTTGATCGTCTTCTCCGCTAAAGGCAAGCTCTTTGAATACTCTAC
TGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTTATG
CGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGGACA
TTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAATCA
AAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGCTTC
AAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCAAGA
AAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGACAG
TTATTGAAAAGAGCAAACACTTGCTTGC
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