FC921744

Overview
NameFC921744
Unique NameFC921744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23
Identity = 59/148 (39.86%), Postives = 100/148 (67.57%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 615
            MGRG++++KRIEN  NRQVT+SKRR+G++KKA EI+VLCDA+V+LI+F   GK+ EY S  + +  +L+ Y++   + R+L   + E   N + E  ++K   + +Q   +H  GED+  L+ KEL  +E+ + +GL  I +++++++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQK--TSGRRLWDAKHE---NLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEIL 143          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.058e-23
Identity = 57/162 (35.19%), Postives = 107/162 (66.05%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQL--MLQSISELQKKDS 651
            MGRG++++KRIEN  NRQVT+SKRR+G++KKA EISVLCDA V++I+F++ GK+ E+ S  + +  +L+ Y +   + ++L   + E   N   E +++K   + +Q   +H  GED+  L+ KEL  +E  +++G   +++++ +   M++  +E+ ++++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHK--LSGKRLWDPKHEHLDN---EINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEFVRMMRKHNEMVEEEN 157          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.635e-22
Identity = 67/182 (36.81%), Postives = 105/182 (57.69%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWT----------------------LEYSKLKARMEVLQR---NQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKK 645
            M R R +++RIE+   RQVTFSKRR GL KKA E++VLCDA+VAL+VFS+ GKL ++++ S M  I+++Y  +    + L   + +P+ +                        LE+SK  +  E L       +   GE+L  LS++ELQ +E+ +++GL+ +   K+Q  +Q ISELQ+K
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFAS-SNMNEIIDKYTTH---SKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRK 178          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.970e-21
Identity = 52/141 (36.88%), Postives = 89/141 (63.12%), Query Frame = 1
Query:  253 GLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTDSC-MERILERYERYCYAERQLQAN--EIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKKDSY*KEQ 666
            GLLKKA E+++LCDA++ +I+FS+ GK+FE+S+    M  I++RY++       L  N   +  N     E +++K  ++ LQ   +HF GEDL  L++ E+  +EQQ++  +  +RSRK QL+ Q +  L++K++  +EQ
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQK-------LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQ 135          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 55/165 (33.33%), Postives = 98/165 (59.39%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKAR-------MEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQKK 645
            MGRG++++++IENK NRQVTFSKRR+G++KKA E++VLCDA+V+L++ S+  KL  Y S    ++++ + Y++            IE    W  ++ +++ +         +L+R     MG DL  L+L EL +++Q+++  +  IR++K   +       +KK
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQK------------IEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKK 153          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 55/162 (33.95%), Postives = 94/162 (58.02%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY--STDSCMERILERYERYCYAE-----RQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISELQ 639
            MGRGR ++KRIEN   RQ TF KRR GL KKA E++VLCDA++ L++FSA GKL+ +   T   +   +ERYE   + +     RQ +  E+E          K+ +  ++L++  +    +D  + ++  L+++E  +++ ++ +RS K++ +   I  LQ
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELE----------KVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQ 152          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERY 393
            MGR ++Q+ RI ++ NRQVTF+KR+ G++KKA+E+SVLCD E+ALI+FS+  KL++Y STD  M+R+L +Y  Y
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTD--MDRVLLKYTEY 72          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERY 393
            MGR ++Q++RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F+   KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERY 393
            MGR ++Q++RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F+   KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of FC921744 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  175 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSAKGKLFEY-STDSCMERILERYERY 393
            MGR ++Q++RI ++ NRQVTF+KR+ GL+KKA+E+SVLCD E+ALI+F+   KLF+Y STD  M+++L +Y  Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVLLKYTEY 72          
The following BLAST results are available for this feature:
BLAST of FC921744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MADS2_PETHY1.397e-2339.86Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
GLOB_ANTMA9.058e-2335.19Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MAD55_ORYSJ2.635e-2236.81MADS-box transcription factor 55 OS=Oryza sativa s... [more]
AP32_ASAEU4.970e-2136.88MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
CMB2_DIACA7.177e-2033.33MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MAD32_ORYSJ7.935e-1933.95MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2_DROME2.822e-1655.41Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA4.814e-1655.41Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT4.814e-1655.41Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE4.814e-1655.41Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32108H02EF RVDevelopN Citrus clementina cDNA clone C32108H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921744 ID=FC921744; Name=FC921744; organism=Citrus clementina; type=EST; length=678bp
GATAGCAAAAGTTCTGCAGCACACTACTCACTACCTGCTCTAATATCTTT
TTCTATAAAAGTACAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGT
TTCTTTATAGCTAATTAAGGGTGTTCTAACTAGAGTGGAGAATTGCTGGT
GATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGGTGCAGCTGAA
GAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCTAAGAGAAGGT
CTGGTTTATTGAAAAAGGCCCATGAGATCTCTGTGCTTTGTGACGCTGAA
GTTGCTTTGATCGTCTTCTCCGCTAAAGGCAAGCTCTTTGAATACTCTAC
TGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGGTATTGTTATG
CGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGGAAACTGGACA
TTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTACAAAGAAATCA
AAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTCAAAGAGCTTC
AAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCATTCGATCAAGA
AAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGAAAAAGGACAG
TTATTGAAAAGAGCAAACACTTGCTTGC
back to top