FC921746

Overview
NameFC921746
Unique NameFC921746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H66_ORYSJ (Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 55/193 (28.50%), Postives = 87/193 (45.08%), Query Frame = 1
Query:    1 GKESKGEGLMEKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDP----VADEGSDHF--NEASNPASRSWSPNIISRKTVPNLDNHSFHPHW 561
            G+  +     E+  +  C +Y  T  C+ G  C+F+H   +         V   + N  G      G   C+Y+L  G CK+G TCKF H +EK     +       +LN LG P+R +E EC +Y+R G C +   C+F+HP P    VA   S +     A++P   ++ P  ++  T+    +    P W
Sbjct:   55 GESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRK------LAVAAARMN--GEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRV------QLNVLGYPMRPNEKECAYYLRTGQCKFASTCKFHHPQPSNTMVAVRNSMYSPGQSATSPGQHTY-PGAVTNWTLSRSASFIASPRW 232          

HSP 2 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 35/100 (35.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query:  211 CKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHP----------DPVADEGSDHFNEASNP 480
            C++++  G CK+G  CKF H KE+           +  LN LGLP+R  E  C FY R G C +G +C+F+HP           P  D  S H+  + +P
Sbjct:  324 CQFYMKTGDCKFGAVCKFHHPKER------LVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMGTLMYGSATSPRGDVSSMHYQLSPSP 417          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H8_ORYSJ (Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=Os01g0616400 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 51/166 (30.72%), Postives = 75/166 (45.18%), Query Frame = 1
Query:   19 EGLMEKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIG-CKYHLSAGGCKYGNTCKFSHSKE--------KPQTYIKKSEK-------------------ASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPD 432
            E   E+  +  C F+  T  CK G  C+F+H  EK  N L     N        S++ +      C ++   G CK+   CKF+H K+        +P++ +    +                   A+ E N  GLP+R  E++CPFYM+ GSC +G  CRFNHPD
Sbjct:  151 ESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKV-NALASGNTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPD 315          

HSP 2 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 46/145 (31.72%), Postives = 65/145 (44.83%), Query Frame = 1
Query:   52 CKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKE---NKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLG-LPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDHFNEAS 474
            C FY  T  CK G +C+F H        +P  G+   KE   N   S  E  G   C + +  G CK+G+ CKF+H KEK       +      +     LP+R  E  C FY + G C +   C+FNHP  +    S +  E++
Sbjct:  111 CAFYMMTRTCKFGGSCKFDHPQW-----VPEGGIPNWKEQAANVEESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESA 250          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H43_ORYSJ (Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 57/183 (31.15%), Postives = 81/183 (44.26%), Query Frame = 1
Query:   52 CKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKP----QTYIK-----------KSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDH--FNEASNPASRSWSPNIISRKTVPNLDNHSF 549
            C +Y     CK G +C ++H      +P P  G +  K  +        G   C Y++  G CK+G  C+F+H    P    Q Y             KS+    +LN LGLP+R     C +YM  G C +G +C+F+HPDP    GSDH  +  +SN    S   NI S       + H+F
Sbjct:   50 CSYYVKFGSCKFGISCVYNHP-----DPRPQHGADDKKPAE--QFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHPDP----GSDHEKWVVSSNANQVSSQVNIYSVLDHGESNEHTF 221          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H26_ARATH (Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis thaliana GN=ZFN2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 49/137 (35.77%), Postives = 71/137 (51.82%), Query Frame = 1
Query:   52 CKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPEL-NFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDH 459
            C+F+  T  C +G +CR++H +      LP  G+   ++     L E  G   C+     G CKYG TCK+ H K++          A P L N LGLP+R  E  CP+YM+ G C +GV C+F+HP P +   + H
Sbjct:   50 CQFFLRTGQCGYGNSCRYNHPLTN----LP-QGIIYYRDQ----LPERVGQPDCE----TGACKYGPTCKYHHPKDR--------NGAGPVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHHPHPHSQPSNGH 165          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 46/128 (35.94%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   52 CKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDP 435
            C +Y  T  C+ G  CRF+H   +    L  +    MK    G   E  G   C+Y+L  G CK+G TC+F H K+K     + +      LN LG P+R +E E  +Y+R G C +G  C+F+HP P
Sbjct:   36 CSYYIRTGLCRFGATCRFNHPPNRK---LAIATAR-MK----GEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVA------LNILGYPLRPNESERAYYLRTGQCKFGNTCKFHHPQP 149          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H6_ORYSJ (Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 43/136 (31.62%), Postives = 65/136 (47.79%), Query Frame = 1
Query:   25 LMEKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPD 432
            L E+  +  C +Y  T  C  G+ CR++H  ++      F G  G +        E  G   C+Y++  G CK+G  CK+ H K+               LN  G PIR+ E EC +YM+ G C +G  C+F+HP+
Sbjct:   56 LPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTE--FGG--GARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGAVL-------PVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPE 180          

HSP 2 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 33/100 (33.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  136 LPFSGVNGMKEN--KGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHP 429
            +P++   G   N  +     E  G   C+Y++  G CK+G TCK+ H +E        + K+   +N L LP+R     C +Y +NG C YGV C+++HP
Sbjct:  286 VPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPREL------SAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHP 379          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H5_ORYSJ (Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 1
Query:    1 GKESKGEG-LMEKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPD 432
            G E+   G L E+  +  C +Y  T  C +GE CR++H  +++   +  +G  G K        E  G   C+Y++  G CK+G+ CK+ H +E     +         LN  G P+R  E +C +Y++ G C +G  C+F+HP+
Sbjct:   39 GGEAVAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAAV-LNG--GGKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQAVM--------LNSSGYPLRSGEKDCTYYVKTGHCKFGSTCKFHHPE 172          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H32_ARATH (Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 38/128 (29.69%), Postives = 60/128 (46.88%), Query Frame = 1
Query:   52 CKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDP 435
            C +Y  T  C +G  CR++H  +++                 G   E  G   C+++L  G CK+G +CKF H K            +   LN  G P+R  + EC +Y++ G C +G+ C+F+HP P
Sbjct:   51 CAYYMRTGVCGYGNRCRYNHPRDRASVEATVRAT--------GQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAG------GSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFGITCKFHHPQP 164          

HSP 2 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  190 EMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHP 429
            E  G   C+Y+L  G CK+G +CKF H +++         +A+  L+ +GLP+R     C FY++NG C +G  C+F+HP
Sbjct:  288 ERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPP------RANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H57_ARATH (Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 43/133 (32.33%), Postives = 64/133 (48.12%), Query Frame = 1
Query:   31 EKTVQIQCKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHP 429
            E+  +  C +Y  T  C+ G  CRF+H  ++         V      KG    E  G   C+++L  G CK+G TCKF H + K           S  +N L  P+R +E +C +++R G C +G  C+FNHP
Sbjct:   41 ERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKL-------VIATARIKG-EYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGI------DGSVSVNVLSYPLRPNEDDCSYFLRIGQCKFGGTCKFNHP 159          
BLAST of FC921746 vs. ExPASy Swiss-Prot
Match: C3H42_ORYSJ (Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa subsp. japonica GN=Os06g0519400 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 47/150 (31.33%), Postives = 68/150 (45.33%), Query Frame = 1
Query:   52 CKFYQGTEGCKHGEACRFSHSMEKSENPLPFSGVNGMKENKGGSLVEMTGLIGCKYHLSAGGCKYGNTCKFSHSKEK-PQTYIK-------------KSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDH 459
            C +Y     CK G  C ++H       P   +G     E+      +  G   C ++L  G CKYG  C+F+H  ++ PQ  +              KSE    +LNFLGLP+R     C +YM  G C +G +C+F+HP    + GS H
Sbjct:   85 CSYYVEFGSCKFGMRCLYNH-------PAKHAGGCDKLEHP-----QRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHP----NSGSGH 218          
The following BLAST results are available for this feature:
BLAST of FC921746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
C3H66_ORYSJ2.688e-1728.50Zinc finger CCCH domain-containing protein 66 OS=O... [more]
C3H8_ORYSJ2.276e-1630.72Zinc finger CCCH domain-containing protein 8 OS=Or... [more]
C3H43_ORYSJ2.972e-1631.15Zinc finger CCCH domain-containing protein 43 OS=O... [more]
C3H26_ARATH2.972e-1635.77Zinc finger CCCH domain-containing protein 26 OS=A... [more]
ZFNL_PEA5.070e-1635.94Zinc finger CCCH domain-containing protein ZFN-lik... [more]
C3H6_ORYSJ6.621e-1631.62Zinc finger CCCH domain-containing protein 6 OS=Or... [more]
C3H5_ORYSJ8.648e-1630.34Zinc finger CCCH domain-containing protein 5 OS=Or... [more]
C3H32_ARATH1.927e-1529.69Zinc finger CCCH domain-containing protein 32 OS=A... [more]
C3H57_ARATH2.130e-1432.33Zinc finger CCCH domain-containing protein 57 OS=A... [more]
C3H42_ORYSJ5.246e-1331.33Zinc finger CCCH domain-containing protein 42 OS=O... [more]

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Properties
Property NameValue
Genbank descriptionC32108H04EF RVDevelopN Citrus clementina cDNA clone C32108H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921746 ID=FC921746; Name=FC921746; organism=Citrus clementina; type=EST; length=696bp
GGGAAGGAGAGCAAAGGTGAAGGCCTTATGGAGAAGACAGTGCAGATTCA
ATGCAAGTTTTACCAAGGGACAGAAGGATGCAAGCATGGAGAAGCTTGTA
GATTTAGCCACTCCATGGAGAAGTCTGAGAACCCCCTTCCCTTTTCTGGT
GTAAACGGAATGAAGGAGAACAAAGGTGGAAGCCTTGTGGAGATGACAGG
GCTTATTGGATGCAAGTATCACTTATCTGCTGGAGGGTGCAAGTATGGAA
ACACTTGTAAATTTAGTCACTCCAAAGAGAAGCCCCAGACATACATTAAA
AAGTCTGAGAAAGCATCACCTGAGCTTAACTTTTTAGGTCTTCCAATCAG
AGTGCATGAGATAGAATGTCCTTTCTACATGCGCAATGGCTCTTGTGCAT
ATGGAGTTGATTGCAGGTTTAATCATCCTGATCCTGTTGCTGATGAAGGA
TCTGATCATTTCAATGAGGCATCTAACCCAGCTTCAAGATCGTGGTCTCC
AAATATAATATCACGTAAAACCGTTCCCAACTTGGATAATCACTCATTTC
ATCCTCATTGGATGCTAAAATCCAAGTTTAATAGCCTTCAGGGATCCGTT
TACCCACAGGCAAAAGCTGAGCTGGCTCTTTCAGTCCTGCGCTTGGCAAT
CTAACAAGACGGCAGATACCTCACATATCATCATTCAATGATTCCT
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