FC923090

Overview
NameFC923090
Unique NameFC923090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923090_ssr29 microsatellite FC923090_ssr29:29..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14655 contig Ccv1_Contig14655:58..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923090 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.363e-37
Identity = 83/187 (44.39%), Postives = 116/187 (62.03%), Query Frame = 2 
Query:  101 LSIGGTGYIGKFIVEASVKAGHPTFVLVRESIVSGPSKSQLLDHFKNLGVKIVVGDVLNHESLVKAIKQ--VDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHGAVEPTKSTYDVKAKIRRAVEAEGIPYTYVEFYFFDGYFLPNLLQPGATAPPRDKVVIFGDGNQK--FITG 649
            L +GGTG+IG+FI +AS+  G+PTF+LVR   VS PSK+ ++  F++ G K++ G + + E + K +K+  +DVVIS VG A L DQ+ ++ AIK    +KRF PSEFG+DVDR    VEP  + Y  K  +RRAVE  GIP+T +       +   +   P    PP D+  I+GDGN K  FI G
Sbjct:   16 LVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRT-DPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDG 200

HSP 2 Score: 33.8834 bits (76), Expect = 4.363e-37
Identity = 13/23 (56.52%), Postives = 19/23 (82.61%), Query Frame = 3 
Query:  648 GDDIGTYTIKAVDDPRTLNKKLY 716
            G+DIG +T+K +DD RTLNK ++
Sbjct:  200 GNDIGKFTMKTIDDIRTLNKNVH 222
The following BLAST results are available for this feature:
BLAST of FC923090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN4.363e-3744.39Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionC31701A01EF StrClemenN Citrus clementina cDNA clone C31701A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923090 ID=FC923090; Name=FC923090; organism=Citrus clementina; type=EST; length=719bp
GATACAAGGCGCCGGTATCATTTCATTCAATAATAATAATAATAATAATA
AACAAACTCTCCGGAATTGAACTGAACGAGTTTCAGAAATGGCATCGATT
CTATCCATCGGCGGGACAGGGTATATCGGTAAATTCATCGTGGAAGCAAG
CGTGAAAGCCGGCCACCCGACGTTCGTGCTCGTGAGGGAATCCATAGTCT
CAGGTCCTTCCAAATCTCAGCTCCTCGACCACTTCAAAAACCTCGGCGTC
AAAATCGTTGTCGGAGATGTTTTGAATCACGAGAGTTTGGTGAAGGCGAT
AAAACAAGTGGACGTGGTGATATCGACAGTCGGTCACGCTTTATTAGCCG
ATCAGGTCAAGATTATTGCTGCCATTAAAGAAGCCGGTAACGTTAAGAGA
TTCTTCCCATCGGAATTTGGAAATGATGTTGATCGAGTCCATGGCGCCGT
GGAGCCAACAAAATCGACGTATGACGTAAAGGCGAAAATCCGCCGAGCCG
TTGAGGCAGAAGGCATTCCGTACACTTACGTAGAATTTTATTTTTTTGAT
GGCTACTTCCTCCCTAATTTGTTGCAGCCTGGGGCCACTGCCCCCCCTAG
GGATAAGGTTGTCATCTTCGGCGATGGAAATCAAAAGTTTATAACAGGGA
GATGATATTGGNACCTACACTATCAAAGCAGTTGATGATCCGAGAACCTT
GAACAAAAAACTTTACATT
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