FC923091

Overview
NameFC923091
Unique NameFC923091
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14283 contig Ccv1_Contig14283:71..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: BCHI_CHLP8 (Magnesium-chelatase 38 kDa subunit OS=Chlorobaculum parvum (strain NCIB 8327) GN=bchI PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.776e-37
Identity = 82/133 (61.65%), Postives = 101/133 (75.94%), Query Frame = 2
Query:  290 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRES-VVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQ 685
            +PFT+IVGQEEMKL L+LN+IDP+IGGV++MG RGTGKSTTVR+L ++LP+I  V GD YN   E    M   V+ + V+K  ++      + +VDLPLGATEDRVCGTIDIEKALT GVKAFEPGLL  A +
Sbjct:    3 FPFTSIVGQEEMKLSLILNIIDPRIGGVLVMGHRGTGKSTTVRALAEVLPLIDRVKGDIYNRTVEQYIEMESGVKGAPVLKASDVKTEKIPVPVVDLPLGATEDRVCGTIDIEKALTSGVKAFEPGLLAQANR 135          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: Y911_METJA (Magnesium-chelatase subunit chlI homolog OS=Methanocaldococcus jannaschii GN=MJ0911 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.315e-35
Identity = 75/135 (55.56%), Postives = 98/135 (72.59%), Query Frame = 2
Query:  287 VYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            +YPFTAIVGQE+MK  L+LN I+PKIGGV+I G++GT KST VR+L DLLP I++V G P+N DP        ++ +   K  EL  T  K+ +V+LP+GATEDRV GT+DIEKA+ EG+KA EPG+L  A + I
Sbjct:    7 IYPFTAIVGQEKMKKALILNAINPKIGGVLIRGEKGTAKSTAVRALADLLPEIEIVEGCPFNCDPNGNLC---DICKEKKKRGELKTTKKKMKVVNLPIGATEDRVIGTLDIEKAIKEGIKALEPGILAEANRNI 138          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: BCHI_ACIRU (Magnesium-chelatase 38 kDa subunit OS=Acidiphilium rubrum GN=bchI PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30
Identity = 69/128 (53.91%), Postives = 88/128 (68.75%), Query Frame = 2
Query:  287 VYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL 670
            +YPFTAIVGQ EM   +L+  ++P +GGV+  GDRGTGKST VR+L  LLP ++ V G  Y+ DP    A+  E R     G  L+    +I +VDLPLGATEDRV G +D+E+AL +GVKAFEPGLL
Sbjct:    3 LYPFTAIVGQTEMIRAMLIATVEPTLGGVLAFGDRGTGKSTAVRALAALLPTMRAVAGCRYHCDPAARSALCPECRNRRAAG-RLASERVRIPVVDLPLGATEDRVVGALDLERALADGVKAFEPGLL 129          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: BCHI_RHOCA (Magnesium-chelatase 38 kDa subunit OS=Rhodobacter capsulatus GN=bchI PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 69/135 (51.11%), Postives = 90/135 (66.67%), Query Frame = 2
Query:  281 RPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQ 685
            RPV+PF+AIVGQE+MKL LLL  +DP IGGV++ GDRGTGKST VR+L  LLP I+ V G P +S         +E+          ++      +VDLPLG +EDRV G +DIE+A+++G KAFEPGLL  A +
Sbjct:   18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP-------NVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANR 145          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: BCHI_RHOS4 (Magnesium-chelatase 38 kDa subunit OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchI PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.324e-29
Identity = 73/134 (54.48%), Postives = 89/134 (66.42%), Query Frame = 2
Query:  290 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNS-DPED-PEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQ 685
            +PF+AIVGQE+MK  ++L  IDP IGGV++ GDRGTGKST VR+L  LLP+IK V G P NS  PED PE   +     + +            +VDLPLG TEDRV G +DIE+ALT G KAFEPGLL  A +
Sbjct:    5 FPFSAIVGQEQMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIER---------PTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANR 129          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLD_SYNY3 (Magnesium-chelatase subunit chlD OS=Synechocystis sp. (strain PCC 6803) GN=chlD PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 56/136 (41.18%), Postives = 85/136 (62.50%), Query Frame = 2
Query:  290 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESV--VKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            +P TAIVGQE +KL LLL  IDP +GG++I G RGT KS   R++  LLP I+++ G+ Y  DP++P +   +  E    V  ++L         + +PLG TEDR+ G++D+EK++ +G   F+PGLL  A + +
Sbjct:   12 FPITAIVGQEAIKLALLLGAIDPGLGGIVIAGRRGTAKSVMARAIHTLLPPIEIIKGNRYQCDPKNPGSWDDDTLEKFADVPLDQLETQVIPAPFIQIPLGVTEDRLLGSVDVEKSVKQGEAVFQPGLLAQAHRGV 147          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLD_ARATH (Magnesium-chelatase subunit chlD, chloroplastic OS=Arabidopsis thaliana GN=CHLD PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 2
Query:  281 RPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSI--TFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            R  +P  A+VGQE +K  LLL  +D +IGG+ I G RGT K+   R L ++LP I+VVVG   N+DP  P+    ++ E +    + +I     K   + +PLG TEDR+ G++D+E+++  G   F+PGLL  A + +
Sbjct:   80 RQFFPLAAVVGQEGIKTALLLGAVDREIGGIAISGRRGTAKTVMARGLHEILPPIEVVVGSISNADPACPDEWEDDLDERIEYNADNTIKTEIVKSPFIQIPLGVTEDRLIGSVDVEESVKRGTTVFQPGLLAEAHRGV 218          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLD_TOBAC (Magnesium-chelatase subunit chlD, chloroplastic OS=Nicotiana tabacum GN=CHLD PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.046e-21
Identity = 54/139 (38.85%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  281 RPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAM--GIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            R  +P  A++GQ+ +K  LLL  ID +IGG+ I G RGT K+   R L  +LP I+VVVG   N+DP  P+    G+  R        +     K   V +PLG TEDR+ G++D+E+++  G   F+PGLL  A + +
Sbjct:   77 RQYFPLAAVIGQDAIKTALLLGAIDREIGGIAICGKRGTAKTLMARGLHAILPPIEVVVGSMANADPNCPDEWEDGLADRAEYGSDGNIKTQIVKSPFVQIPLGVTEDRLIGSVDVEESVKSGTTVFQPGLLAEAHRGV 215          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLD_PEA (Magnesium-chelatase subunit chlD, chloroplastic OS=Pisum sativum GN=CHLD PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 57/159 (35.85%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  230 TEVNSVEQAQKRSKESQ---RPVYPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAM--GIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            +E  +V QA +   ++    R  +P  A++GQ+ +K  LLL   DP+IGG+ I G RGT K+   R +  +LP I+VV G   N+DP  PE    G+  R        +     K   V +PLG TEDR+ G++D+E+++  G   F+PGLL  A + +
Sbjct:   54 SENGAVLQASEEKLDASNYGRQYFPLAAVIGQDAIKTALLLGATDPRIGGIAISGRRGTAKTIMARGMHAILPPIEVVQGSIANADPSCPEEWEDGLYKRVEYDSDGNVKTHIIKSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGV 212          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: BCHD_HELMO (Magnesium-chelatase 67 kDa subunit OS=Heliobacillus mobilis GN=bchD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.972e-20
Identity = 57/133 (42.86%), Postives = 80/133 (60.15%), Query Frame = 2
Query:  293 PFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMV-------DLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL 670
            P  AI GQE +KL L L  +DP + GV I G RGTGK+   R L  LLP I  + G P + +P +P +     RE     EE  ++ S++ +V       ++PLGATEDR+ G ID+E++L  GV+A++PGLL
Sbjct:    7 PLAAITGQEAVKLALTLAAVDPGLKGVAIAGRRGTGKTVLARGLRHLLPPIDQLEGCPCHCNPAEPHSWCNRCRERFT--EESGLSDSEVPVVQRNAPFSEVPLGATEDRLLGAIDVEQSLAGGVRAWQPGLL 137          
The following BLAST results are available for this feature:
BLAST of FC923091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
BCHI_CHLP81.776e-3761.65Magnesium-chelatase 38 kDa subunit OS=Chlorobaculu... [more]
Y911_METJA6.315e-3555.56Magnesium-chelatase subunit chlI homolog OS=Methan... [more]
BCHI_ACIRU3.586e-3053.91Magnesium-chelatase 38 kDa subunit OS=Acidiphilium... [more]
BCHI_RHOCA1.780e-2951.11Magnesium-chelatase 38 kDa subunit OS=Rhodobacter ... [more]
BCHI_RHOS42.324e-2954.48Magnesium-chelatase 38 kDa subunit OS=Rhodobacter ... [more]
CHLD_SYNY33.840e-2441.18Magnesium-chelatase subunit chlD OS=Synechocystis ... [more]
CHLD_ARATH4.694e-2238.85Magnesium-chelatase subunit chlD, chloroplastic OS... [more]
CHLD_TOBAC1.046e-2138.85Magnesium-chelatase subunit chlD, chloroplastic OS... [more]
CHLD_PEA3.043e-2135.85Magnesium-chelatase subunit chlD, chloroplastic OS... [more]
BCHD_HELMO1.972e-2042.86Magnesium-chelatase 67 kDa subunit OS=Heliobacillu... [more]

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Properties
Property NameValue
Genbank descriptionC31701A02EF StrClemenN Citrus clementina cDNA clone C31701A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923091 ID=FC923091; Name=FC923091; organism=Citrus clementina; type=EST; length=694bp
GGAACAGTAACACTTACATTTGCGCACGGGCATGGCGTCCGTGTTAGGAA
CTCGTTCTTCCTCTGCAATCTTGGCTTCTCGCCCTCTCTCTTTTCCAGCA
TCAAACTCAAAGTCTGCCATCTCCTCTCTCTCCTTAAACCCCGGGCAGAA
TTATGGAAGGAGGTTTTATGGGGGGATTGGGATTGAAGAAAAGATGGGGC
GGGCTCTGTTTGCAGTTACCAATGTTGCCACTGAGGTTAACTCTGTTGAG
CAGGCCCAGAAGAGATCCAAGGAAAGCCAGAGGCCGGTGTATCCATTTAC
TGCAATAGTGGGACAGGAAGAGATGAAATTGTGCCTTTTGTTAAATGTGA
TTGATCCCAAAATTGGTGGTGTTATGATTATGGGTGATAGAGGAACGGGG
AAATCCACCACTGTTAGGTCCTTGGTAGATTTACTCCCCGTAATCAAGGT
AGTTGTCGGTGACCCATATAACTCAGATCCAGAAGATCCAGAGGCCATGG
GTATTGAAGTCAGAGAGTCTGTCGTGAAAGGGGAGGAGCTCTCCATTACA
TTCAGTAAAATCAACATGGTTGATTTGCCATTGGGTGCTACAGAAGACAG
GGTCTGTGGGACGATTGACATTGAGAAAGCTCTAACGGAAGGTGTCAAAG
CATTTGAGCCTGGCCTTCTTTGCTAAGCTAAACAGAGAATTTCT
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