FC923091

Overview
NameFC923091
Unique NameFC923091
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: CHLD_SYNE7 (Magnesium-chelatase subunit chlD OS=Synechococcus elongatus (strain PCC 7942) GN=chlD PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  290 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLC*AKQRI 691
            +P  A+VGQ  +KL L+L  +DP +GGV I G RGT KS   R+L  LLP I+ ++ + +N+DP          ++    GEEL           +PLG TEDR+ G++D+ +++  G   F+PGLL  A + +
Sbjct:   11 FPLPAVVGQGPIKLALILAAVDPGLGGVAIAGRRGTAKSVMARALHALLPPIE-ILENSFNADPNRAGDWDALTQQRQANGEELPTRVIPAPFCQVPLGITEDRLLGSVDVAQSIKRGETVFQPGLLAEAHRGV 143          
BLAST of FC923091 vs. ExPASy Swiss-Prot
Match: Y2850_MYCTU (Uncharacterized protein Rv2850c/MT2916 OS=Mycobacterium tuberculosis GN=Rv2850c PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  290 YPFTAIVGQEEMKLCLLLNVIDPKIGGVMIMGDRGTGKSTTVRSLVDLLPVIKVVVGDPYNSDPEDPEAMGIEVRESVVKGEELSITFSKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLL 670
            YPF+AIVG + ++L LLL  + P+IGG +I G++GT KST VR L  LL                           SV  G       ++  +V+LPLGATEDRV G++D+++ + +G  AF PGLL
Sbjct:    4 YPFSAIVGHDRLRLALLLCAVRPEIGGALIRGEKGTAKSTAVRGLAALL---------------------------SVATGS------TETGLVELPLGATEDRVVGSLDLQRVMRDGEHAFSPGLL 97          
The following BLAST results are available for this feature:
BLAST of FC923091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CHLD_SYNE78.286e-1937.31Magnesium-chelatase subunit chlD OS=Synechococcus ... [more]
Y2850_MYCTU5.938e-1739.37Uncharacterized protein Rv2850c/MT2916 OS=Mycobact... [more]

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Properties
Property NameValue
Genbank descriptionC31701A02EF StrClemenN Citrus clementina cDNA clone C31701A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923091 ID=FC923091; Name=FC923091; organism=Citrus clementina; type=EST; length=694bp
GGAACAGTAACACTTACATTTGCGCACGGGCATGGCGTCCGTGTTAGGAA
CTCGTTCTTCCTCTGCAATCTTGGCTTCTCGCCCTCTCTCTTTTCCAGCA
TCAAACTCAAAGTCTGCCATCTCCTCTCTCTCCTTAAACCCCGGGCAGAA
TTATGGAAGGAGGTTTTATGGGGGGATTGGGATTGAAGAAAAGATGGGGC
GGGCTCTGTTTGCAGTTACCAATGTTGCCACTGAGGTTAACTCTGTTGAG
CAGGCCCAGAAGAGATCCAAGGAAAGCCAGAGGCCGGTGTATCCATTTAC
TGCAATAGTGGGACAGGAAGAGATGAAATTGTGCCTTTTGTTAAATGTGA
TTGATCCCAAAATTGGTGGTGTTATGATTATGGGTGATAGAGGAACGGGG
AAATCCACCACTGTTAGGTCCTTGGTAGATTTACTCCCCGTAATCAAGGT
AGTTGTCGGTGACCCATATAACTCAGATCCAGAAGATCCAGAGGCCATGG
GTATTGAAGTCAGAGAGTCTGTCGTGAAAGGGGAGGAGCTCTCCATTACA
TTCAGTAAAATCAACATGGTTGATTTGCCATTGGGTGCTACAGAAGACAG
GGTCTGTGGGACGATTGACATTGAGAAAGCTCTAACGGAAGGTGTCAAAG
CATTTGAGCCTGGCCTTCTTTGCTAAGCTAAACAGAGAATTTCT
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