FC923092

Overview
NameFC923092
Unique NameFC923092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14383 contig Ccv1_Contig14383:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSJ (Phytochrome B OS=Oryza sativa subsp. japonica GN=PHYB PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 6.175e-83
Identity = 151/232 (65.09%), Postives = 182/232 (78.45%), Query Frame = 3
Query:    6 GRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK---VQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++  E   +    V G  Q    +++G+DELSSVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES   V  L+
Sbjct:  494 GKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAAALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEETVNKLL 725          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSI (Phytochrome B OS=Oryza sativa subsp. indica GN=PHYB PE=3 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 6.175e-83
Identity = 151/232 (65.09%), Postives = 182/232 (78.45%), Query Frame = 3
Query:    6 GRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK---VQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++  E   +    V G  Q    +++G+DELSSVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES   V  L+
Sbjct:  494 GKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAAALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEETVNKLL 725          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHY_PICAB (Phytochrome OS=Picea abies PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.065e-82
Identity = 147/220 (66.82%), Postives = 177/220 (80.45%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 662
            G R WL+G TPTE+Q+ DIA WLL +H D TGLSTDSLAEAGYPGAA LG AVCG+A ARITSKDFLFWFRSHTAKE+ WGGAKH P  KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++RDSF ++ +++DSK   + + N  ++QG+DELS+V  EMVRLIETAT PI  +DS+G +NGWN K AELTGL A E +G+ LID V H+
Sbjct:  465 GKRLWLLGTTPTEAQILDIADWLLEHHRDSTGLSTDSLAEAGYPGAASLGDAVCGIAAARITSKDFLFWFRSHTAKEIIWGGAKHDPNDKDDGRRMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRDSFHDI-DDSDSKTMIHARLNDLRLQGIDELSAVTNEMVRLIETATVPILAIDSNGLVNGWNTKAAELTGLLADEVIGRPLIDLVQHD 683          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHY1_PHYPA (Phytochrome 1 OS=Physcomitrella patens GN=PHY1 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.003e-82
Identity = 149/226 (65.93%), Postives = 180/226 (79.65%), Query Frame = 3
Query:   15 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            WL+G TPTESQ+KDIA WLL  H D TGLSTDSLA+A YP A LLG AVCGMA A+IT+KDFLFWFRSHTAKE+KWGGAKH P    +G KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++  ++D+K   + + N  K+  +DELS VA EMVRLIETATAPI  VDS+G INGWNAK+A++TGLP SEA G+SL+ ++V +ES   VE L+
Sbjct:  450 WLLGTTPTESQIKDIAEWLLEYHKDSTGLSTDSLADANYPAAHLLGDAVCGMAAAKITAKDFLFWFRSHTAKEIKWGGAKHDPGENHDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSFQDI-ADSDTKTMIHARLNDLKLHDMDELSVVANEMVRLIETATAPILAVDSNGMINGWNAKIAQVTGLPVSEAHGRSLVKDLVTDESVAVVERLL 674          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYE_ARATH (Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 5.780e-81
Identity = 147/230 (63.91%), Postives = 179/230 (77.83%), Query Frame = 3
Query:    6 GRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G+CWLVGVTP ESQ+KD+  WL+ NHGD  TGL+TDSL +AGYPGA  LG AVCG+A A  +SKD+L WFRS+TA  +KWGGAKHHP+ KD+ G+MHPRSSF AFLEV K+RS PWE+SEI+AIHSL+++MR+SF      +   + GN        +  +EL+S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL DE+V EES  A+E+L+
Sbjct:  439 GKCWLVGVTPNESQVKDLVNWLVENHGDDSTGLTTDSLVDAGYPGAISLGDAVCGVAAAEFSSKDYLLWFRSNTASAIKWGGAKHHPKDKDDAGRMHPRSSFTAFLEVAKSRSLPWEISEIDAIHSLRLIMRESF----TSSRPVLSGN-----GVARDANELTSFVCEMVRVIETATAPIFGVDSSGCINGWNKKTAEMTGLLASEAMGKSLADEIVQEESRAALESLL 659          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYD_ARATH (Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.574e-78
Identity = 142/232 (61.21%), Postives = 179/232 (77.16%), Query Frame = 3
Query:    6 GRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G+ + +GVTPT+SQ+ DI  WL+ NH D TGLSTDSL +AGYP AA LG AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+ FLEVVK+R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA EMVRLIETAT PIF VD  G INGWNAK+AELTGL   +AMGKSL+ E++++E    V+ L+
Sbjct:  489 GKYYPLGVTPTDSQINDIVEWLVANHSDSTGLSTDSLGDAGYPRAAALGDAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQTFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVDRLL 720          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHY1_CERPU (Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3)

HSP 1 Score: 292.352 bits (747), Expect = 1.574e-78
Identity = 143/230 (62.17%), Postives = 180/230 (78.26%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G R WL+G TPTE+Q+K+IA WLL +H D TGLSTDSLA+A YPGA LLG AVCGMA A+IT+KDFLFWFRSHTA EVKWGGAKH P+ KD+G KMHPRSSFKAFLEVV  RS PWE  E++AIHSLQ+++R SF+++  ++D+K   + + N  K+QGV+E +++A EM R++ETA API  VDS G IN WNAK+A++TGLP  EAM  SL  ++V +ES   VE L+
Sbjct:  445 GKRVWLLGTTPTENQIKEIADWLLEHHNDSTGLSTDSLADANYPGAHLLGDAVCGMAAAKITAKDFLFWFRSHTATEVKWGGAKHDPDEKDDGRKMHPRSSFKAFLEVVNKRSPPWEDVEMDAIHSLQLILRGSFRDI-ADSDTKTMIHARLNDLKLQGVEERNALANEMSRVLETAAAPILAVDSRGMINAWNAKIAQVTGLPVEEAMHCSLTKDLVLDESVVVVERLL 673          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHY_MOUSC (Phytochrome OS=Mougeotia scalaris GN=PHY PE=2 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 5.063e-77
Identity = 139/230 (60.43%), Postives = 174/230 (75.65%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            GGRCWL+G++PT+ Q+KDIA WL+++H D TGLSTDSL +AGYP A  LG  VCGMA ARIT  DFLFWFR H  KEVKW GAK     +D G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++E++ D K+  + +     +QG++ELSSVA EMVRLIETATAPI  VD++G +NGWN K++ELTGL   E MGKSL+ ++ H  S   VE L+
Sbjct:  450 GGRCWLLGISPTQEQVKDIATWLISSHTDTTGLSTDSLVDAGYPKARELGVDVCGMAAARITENDFLFWFRGHAQKEVKWAGAKDGGSEED-GSRMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSFQDIEDKEDRKIV-HARLKEMHLQGMEELSSVASEMVRLIETATAPILAVDTAGCVNGWNFKISELTGLSIPEVMGKSLVKDLTHPSSKDTVEKLL 677          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYB_SOYBN (Phytochrome B OS=Glycine max GN=PHYB PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.352e-74
Identity = 142/229 (62.01%), Postives = 171/229 (74.67%), Query Frame = 3
Query:    6 GRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G  + +GVTPTE+Q++DI  WLL  HGD TGLSTDSL +AGYPG   LG    G   A IT KDFLFWFRSHTAKE+KWGGAK     +  G +MHP SSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ E  N SK   +   +  ++QGVDELSSVA EMVRLIETATAPIF VD  G +NGWNAKV+ELTGLP  EAMGKSL+ ++V +ES   V  L+
Sbjct:  483 GNYYPLGVTPTEAQIRDIIEWLLAFHGDSTGLSTDSLGDAGYPGLPRLGMQFVGWQVAYITEKDFLFWFRSHTAKEIKWGGAKLILRTRMMGQRMHPLSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDAEHRN-SKAVVDPHVSEQELQGVDELSSVAREMVRLIETATAPIFAVDVDGHVNGWNAKVSELTGLPVEEAMGKSLVHDLVFKESEETVNKLL 710          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_PEA (Phytochrome A OS=Pisum sativum GN=PHYA PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.405e-72
Identity = 130/228 (57.02%), Postives = 170/228 (74.56%), Query Frame = 3
Query:    9 RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            + WL+G TPTESQL++IA W+   H D TGLSTDSL++AG+PGA  L   VCGMA  RITSKD +FWFRSHTA E++WGGAKH P  +D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++ ++ +  + +    NT+ N  K++G+ EL +V  EMVRLIETAT PI  VD  GT+NGWN K+AELTGLP  EA+GK L+  +V + S   V+ ++
Sbjct:  454 KLWLLGATPTESQLREIALWMSEYHTDSTGLSTDSLSDAGFPGALSLSDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGDQDDGRKMHPRSSFKAFLEVVKARSVPWKDFEMDAIHSLQLILRNASKDTDIIDLNTKAINTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGTVNGWNIKIAELTGLPVGEAIGKHLL-TLVEDSSTDIVKKML 680          
The following BLAST results are available for this feature:
BLAST of FC923092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PHYB_ORYSJ6.175e-8365.09Phytochrome B OS=Oryza sativa subsp. japonica GN=P... [more]
PHYB_ORYSI6.175e-8365.09Phytochrome B OS=Oryza sativa subsp. indica GN=PHY... [more]
PHY_PICAB3.065e-8266.82Phytochrome OS=Picea abies PE=2 SV=1[more]
PHY1_PHYPA4.003e-8265.93Phytochrome 1 OS=Physcomitrella patens GN=PHY1 PE=... [more]
PHYE_ARATH5.780e-8163.91Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1... [more]
PHYD_ARATH1.574e-7861.21Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1... [more]
PHY1_CERPU1.574e-7862.17Light-sensor Protein kinase OS=Ceratodon purpureus... [more]
PHY_MOUSC5.063e-7760.43Phytochrome OS=Mougeotia scalaris GN=PHY PE=2 SV=2[more]
PHYB_SOYBN2.352e-7462.01Phytochrome B OS=Glycine max GN=PHYB PE=3 SV=1[more]
PHYA_PEA6.405e-7257.02Phytochrome A OS=Pisum sativum GN=PHYA PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31701A04EF StrClemenN Citrus clementina cDNA clone C31701A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923092 ID=FC923092; Name=FC923092; organism=Citrus clementina; type=EST; length=694bp
ATGGTGGGAGATGCTGGCTGGTGGGGGTAACTCCAACTGAATCACAGTTA
AAAGATATTGCATGGTGGCTTCTCAATAATCATGGGGATTGTACAGGGTT
GAGTACTGATAGTTTGGCAGAGGCTGGTTACCCCGGTGCTGCTTTATTGG
GTCAGGCGGTTTGTGGTATGGCTACTGCCAGAATCACTTCAAAGGATTTC
TTATTCTGGTTCAGATCTCACACAGCAAAAGAAGTTAAATGGGGAGGAGC
TAAGCATCACCCAGAGCATAAGGATAACGGTGGCAAAATGCATCCAAGAT
CATCGTTTAAAGCTTTCCTTGAAGTGGTGAAAAATAGGAGTTTTCCTTGG
GAAGTTTCGGAAATCAATGCTATTCACTCTTTGCAAATTGTAATGAGAGA
TTCATTTCAGGAGATGGAGGAAGAAAATGACTCCAAGGTTCAAGGTAATA
CCCAGCAGAATGGCAGTAAGATGCAGGGTGTGGATGAGCTCAGTTCAGTG
GCATGTGAAATGGTTAGATTGATTGAGACAGCGACAGCTCCAATTTTTGG
AGTTGATTCATCTGGTACCATCAATGGGTGGAATGCAAAAGTTGCCGAAT
TGACAGGATTACCAGCTAGTGAAGCCATGGGGAAATCTCTAATTGATGAA
GTAGTTCATGAGGAATCTCANGGAGCTGTTGAAAATCTTATCTG
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