FC923092

Overview
NameFC923092
Unique NameFC923092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14383 contig Ccv1_Contig14383:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSJ (Phytochrome C OS=Oryza sativa subsp. japonica GN=PHYC PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.422e-71
Identity = 135/230 (58.70%), Postives = 169/230 (73.48%), Query Frame = 3
Query:   15 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME---EENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            W++G TP+E+++K+I  WL   H   TGLSTDSL EAGYPGAA LG  VCGMA  +I+SKDF+FWFRSHTAKE+KWGGAKH P +  DNG KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S Q+ +     N   +      +  K+QG+ EL +V  EMVRLIETATAPI  VD +G+INGWN K AELTGLP  EA+GK L+D V+ ++S   V+ ++
Sbjct:  455 WVLGSTPSEAEIKNIVAWLQEYHDGSTGLSTDSLVEAGYPGAAALGDVVCGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPIDADDNGRKMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKSIVTAPSDDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGKPLVDLVI-DDSVEVVKQIL 683          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_LATSA (Phytochrome type A OS=Lathyrus sativus GN=PHYA PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.082e-71
Identity = 128/228 (56.14%), Postives = 168/228 (73.68%), Query Frame = 3
Query:    9 RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            + WL+G TPTE Q+++IA W+   H D TGLSTDSL +AG+PGA  L   VCGMA  RITSKD +FWFRSHTA E++WGGAKH P  +D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++ ++ +  + +    NT+ N  K++G+ EL +V  EMVRLIETAT PI  VD  GT+NGWN K+AELTGLP  EA+GK L+  +V + S   V+ ++
Sbjct:  454 KLWLLGATPTEYQIREIALWMSEYHTDSTGLSTDSLLDAGFPGALSLSDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGEQDDGRKMHPRSSFKAFLEVVKARSVPWKDFEMDAIHSLQLILRNASKDTDIIDLNTKAINTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGTVNGWNIKIAELTGLPVGEAIGKHLL-TLVEDSSTDIVKKML 680          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYC_SORBI (Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.060e-70
Identity = 136/217 (62.67%), Postives = 164/217 (75.58%), Query Frame = 3
Query:   18 LVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV 656
            L+G TP+ES++K IA WL  NH   TGLSTDSL EAGYPGAA L + VCGMA  +I+SKDF+FWFRSHT KE+KWGGAKH P +  DNG KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S Q+ E+ N + V+   +    +  K+QG+ EL +V  EMVRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ LID VV
Sbjct:  455 LLGSTPSESEIKSIATWLQENHDGSTGLSTDSLVEAGYPGAAALREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDADDNGRKMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANRNNVRSIVKAPPDDTKKIQGLLELRTVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVV 670          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_SOLTU (Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 3.515e-70
Identity = 126/224 (56.25%), Postives = 163/224 (72.77%), Query Frame = 3
Query:   21 VGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            +G+ P++ QL DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RI+ KD+LFW+RSHTA EV+WGGAKH P  KD+G KMHPRSSFK FLEVVK RS PW+  E++ IHSLQ+++R++F++ +  N + +  +T+ N  K+ G+ EL +V  EMVRLIETA+ PIF VD  G +NGWN KVAELTGLP  EA+GK L+  +V + S   V  ++
Sbjct:  458 LGMNPSDFQLHDIVSWLCEYHTDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRISDKDWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKGFLEVVKTRSIPWKDYEMDRIHSLQLILRNAFKDADAVNSNTISIHTKLNDLKIDGMQELEAVTAEMVRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKHLL-TLVEDSSVDTVNKML 680          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSI (Phytochrome C OS=Oryza sativa subsp. indica GN=PHYC PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 1.023e-69
Identity = 134/230 (58.26%), Postives = 168/230 (73.04%), Query Frame = 3
Query:   15 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME---EENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            W++G TP+E+++K+I  WL   H   TGLSTDSL EAGYPGAA LG  V GMA  +I+SKDF+FWFRSHTAKE+KWGGAKH P +  DNG KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S Q+ +     N   +      +  K+QG+ EL +V  EMVRLIETATAPI  VD +G+INGWN K AELTGLP  EA+GK L+D V+ ++S   V+ ++
Sbjct:  455 WVLGSTPSEAEIKNIVAWLQEYHDGSTGLSTDSLVEAGYPGAAALGDVVYGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPIDADDNGRKMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKSIVTAPSDDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGKPLVDLVI-DDSVEVVKQIL 683          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_POPTM (Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.278e-69
Identity = 125/228 (54.82%), Postives = 167/228 (73.25%), Query Frame = 3
Query:    9 RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            + W +G+TP++ QL+DIA+WL   H D TGLSTDSL +AGYPGA  LG  VCGMA  RITSKD LFWFRS TA E++WGGAKH P  KD+G +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F+++E  +      + + +  K++G+ EL +V  EMVRLIETAT PI  VD  G +NGWN K++ELTGL   +A+GK L+  +V + S   V+ ++
Sbjct:  454 KIWRLGITPSDLQLQDIAFWLSEYHMDSTGLSTDSLYDAGYPGALALGDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGEKDDGRRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDIETMDVDTKTIHARLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLL-TLVEDSSVDIVKRML 680          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA1_MAIZE (Phytochrome A OS=Zea mays GN=PHYA1 PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.929e-68
Identity = 126/231 (54.55%), Postives = 164/231 (71.00%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G + W +   PTESQ++DIA+WL   HGD TGLSTDSL +AGYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR SFKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +   ++  G   Q G  K+ G+ EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V + S   V+ ++
Sbjct:  456 GDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDAGYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLSFKAFLEVVKTKSLPWSDYEMDAIHSLQLILRGTLNDASK--PAQASGLDNQIGDLKLDGLAELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVEDSSVSLVQRML 683          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_CUCPE (Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.296e-68
Identity = 126/228 (55.26%), Postives = 159/228 (69.74%), Query Frame = 3
Query:    9 RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            + W +G+TP + QL DIA WL   H D TGLSTDSL +AGYPGA  LG  VCGMA  RIT+ D +FWFRSHTA E++WGGAKH    KD+  KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ +    ++    T     K++G  EL SV  EMVRLIETAT PI  VD  G INGWN K+AELTGLP  +A+GK L+  +V + S   V  ++
Sbjct:  453 KIWRLGLTPNDFQLLDIASWLSEYHMDSTGLSTDSLYDAGYPGAIALGDEVCGMAAVRITNNDMIFWFRSHTASEIRWGGAKHEHGQKDDARKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDATEINRKSIQTTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIGKHLL-TLVEDSSVEVVRKML 679          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_ORYSJ (Phytochrome A OS=Oryza sativa subsp. japonica GN=PHYA PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.329e-68
Identity = 127/230 (55.22%), Postives = 163/230 (70.87%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            GG+ W +   PTESQ++DIA+WL + H D TGLSTDSL +AGYPGAA LG  +CGMA A+I SKD LFWFRSHTA E++WGGAKH P  KD+  +MHPR SFKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +   +    N Q    K+ G+ EL +V  EMVRL+ETAT PI  VDS+G +NGWN KVAELTGL   EA+G+ ++  VV E S   V+ ++
Sbjct:  456 GGKVWRLQNAPTESQIRDIAFWLSDVHRDSTGLSTDSLHDAGYPGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKHDPSDKDDSRRMHPRLSFKAFLEVVKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPTRAASLDN-QVGDLKLDGLAELQAVTSEMVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHIL-TVVEESSVPVVQRML 683          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_ORYSI (Phytochrome A OS=Oryza sativa subsp. indica GN=PHYA PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 7.329e-68
Identity = 127/230 (55.22%), Postives = 163/230 (70.87%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            GG+ W +   PTESQ++DIA+WL + H D TGLSTDSL +AGYPGAA LG  +CGMA A+I SKD LFWFRSHTA E++WGGAKH P  KD+  +MHPR SFKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +   +    N Q    K+ G+ EL +V  EMVRL+ETAT PI  VDS+G +NGWN KVAELTGL   EA+G+ ++  VV E S   V+ ++
Sbjct:  456 GGKVWRLQNAPTESQIRDIAFWLSDVHRDSTGLSTDSLHDAGYPGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKHDPSDKDDSRRMHPRLSFKAFLEVVKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPTRAASLDN-QVGDLKLDGLAELQAVTSEMVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHIL-TVVEESSVPVVQRML 683          
The following BLAST results are available for this feature:
BLAST of FC923092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PHYC_ORYSJ5.422e-7158.70Phytochrome C OS=Oryza sativa subsp. japonica GN=P... [more]
PHYA_LATSA7.082e-7156.14Phytochrome type A OS=Lathyrus sativus GN=PHYA PE=... [more]
PHYC_SORBI2.060e-7062.67Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2 SV=1[more]
PHYA_SOLTU3.515e-7056.25Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV... [more]
PHYC_ORYSI1.023e-6958.26Phytochrome C OS=Oryza sativa subsp. indica GN=PHY... [more]
PHYA_POPTM2.278e-6954.82Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 ... [more]
PHYA1_MAIZE1.929e-6854.55Phytochrome A OS=Zea mays GN=PHYA1 PE=3 SV=1[more]
PHYA_CUCPE4.296e-6855.26Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1[more]
PHYA_ORYSJ7.329e-6855.22Phytochrome A OS=Oryza sativa subsp. japonica GN=P... [more]
PHYA_ORYSI7.329e-6855.22Phytochrome A OS=Oryza sativa subsp. indica GN=PHY... [more]

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Properties
Property NameValue
Genbank descriptionC31701A04EF StrClemenN Citrus clementina cDNA clone C31701A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923092 ID=FC923092; Name=FC923092; organism=Citrus clementina; type=EST; length=694bp
ATGGTGGGAGATGCTGGCTGGTGGGGGTAACTCCAACTGAATCACAGTTA
AAAGATATTGCATGGTGGCTTCTCAATAATCATGGGGATTGTACAGGGTT
GAGTACTGATAGTTTGGCAGAGGCTGGTTACCCCGGTGCTGCTTTATTGG
GTCAGGCGGTTTGTGGTATGGCTACTGCCAGAATCACTTCAAAGGATTTC
TTATTCTGGTTCAGATCTCACACAGCAAAAGAAGTTAAATGGGGAGGAGC
TAAGCATCACCCAGAGCATAAGGATAACGGTGGCAAAATGCATCCAAGAT
CATCGTTTAAAGCTTTCCTTGAAGTGGTGAAAAATAGGAGTTTTCCTTGG
GAAGTTTCGGAAATCAATGCTATTCACTCTTTGCAAATTGTAATGAGAGA
TTCATTTCAGGAGATGGAGGAAGAAAATGACTCCAAGGTTCAAGGTAATA
CCCAGCAGAATGGCAGTAAGATGCAGGGTGTGGATGAGCTCAGTTCAGTG
GCATGTGAAATGGTTAGATTGATTGAGACAGCGACAGCTCCAATTTTTGG
AGTTGATTCATCTGGTACCATCAATGGGTGGAATGCAAAAGTTGCCGAAT
TGACAGGATTACCAGCTAGTGAAGCCATGGGGAAATCTCTAATTGATGAA
GTAGTTCATGAGGAATCTCANGGAGCTGTTGAAAATCTTATCTG
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