FC923092

Overview
NameFC923092
Unique NameFC923092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14383 contig Ccv1_Contig14383:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_SORBI (Phytochrome a OS=Sorghum bicolor GN=PHYA PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.250e-67
Identity = 125/230 (54.35%), Postives = 162/230 (70.43%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            G + W +   PTESQ++DIA+WL   HGD TGLSTDSL +AGYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR SFKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +   +    N Q    K+ G+ EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V + S   V+ ++
Sbjct:  456 GDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDAGYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLSFKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKPVQASGLDN-QIGDLKLDGLAELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVEDSSVSIVQRML 683          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_ARATH (Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 2.132e-67
Identity = 123/228 (53.95%), Postives = 164/228 (71.93%), Query Frame = 3
Query:    9 RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            + W +G TP+E  L++IA WL   H D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +     ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGL   EA+GK  +  +V + S   V+ ++
Sbjct:  455 KIWKLGTTPSEFHLQEIASWLCEYHMDSTGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSETTDVNTKVIYSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVDEAIGKHFL-TLVEDSSVEIVKRML 681          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA1_TOBAC (Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.204e-67
Identity = 123/224 (54.91%), Postives = 161/224 (71.88%), Query Frame = 3
Query:   21 VGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            +G+TP++ QL DI  WL   H D TGLSTDSL +AG+PGA  LG  VCGMA  RI+ K +LFW+RSHTA EV+WGGAKH P  KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++ ++ +  + +    +T+ N  K+ G+ EL +V  EMVRLIETA+ PIF VD  G +NGWN K+AELTGLP  EA+G  L+  +V + S   V  ++
Sbjct:  458 LGMTPSDFQLHDIVSWLSEYHTDSTGLSTDSLYDAGFPGALALGDVVCGMAAVRISDKGWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSVPWKDYEMDAIHSLQLILRNASKDADAMDSNTNIIHTKLNDLKIDGLQELEAVTAEMVRLIETASVPIFAVDVDGQLNGWNTKIAELTGLPVDEAIGNHLL-TLVEDSSVDTVSKML 680          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_PETCR (Phytochrome A OS=Petroselinum crispum GN=PHYA PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.689e-64
Identity = 124/235 (52.77%), Postives = 160/235 (68.09%), Query Frame = 3
Query:    9 RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRD--SFQEMEEENDSKVQGN-----TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            + + +G TP++ QL+DI  WL   H D TGLSTDSL +AGYPGA  LG  VCGMA  +ITS D LFWFRSH A  ++WGGAK  P+   +G KMHPRSSFKAFLEVVK RS  W+  E++AIHSLQ+++R   S ++       +++ N     T+ N  K++G+ EL +V  EMVRLIETAT PIF VD+   +NGWN K+AELTGLP  +AMGK L+  +V + S G V  L+
Sbjct:  452 KVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDAGYPGALALGDVVCGMAVVKITSHDMLFWFRSHAAGHIRWGGAKAEPDENHDGRKMHPRSSFKAFLEVVKTRSTTWKEFEMDAIHSLQLILRKALSVEKAVAAQGDEIRSNTDVIHTKLNDLKIEGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLL-TLVEDSSVGTVVFLL 685          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA3_AVESA (Phytochrome A type 3 OS=Avena sativa GN=PHYA3 PE=1 SV=3)

HSP 1 Score: 245.358 bits (625), Expect = 2.207e-64
Identity = 120/230 (52.17%), Postives = 158/230 (68.70%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            GG+ W +   PTESQ+ DIA+WL + H D TGLSTDSL +AGYPGAA LG  +CGMA A+I SKD LFWFRSHTA E++WGGAK+ P   D+  +MHPR SFKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +        N Q    K+ G+ EL +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V + S   V+ ++
Sbjct:  454 GGKVWRLRNAPTESQIHDIAFWLSDVHRDSTGLSTDSLHDAGYPGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKNDPSDMDDSRRMHPRLSFKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDASKPKREASLDN-QIGDLKLDGLAELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEDSSVPVVQRML 681          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_SOYBN (Phytochrome A OS=Glycine max GN=PHYA PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.916e-64
Identity = 122/237 (51.48%), Postives = 162/237 (68.35%), Query Frame = 3
Query:    9 RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG-NTQQNGSKMQGVD--------ELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            + W +GVTP+E Q+++IA WL   H D T  STDSL +AG+P A  LG  VCGMA+ R+T+KD +FWFRSHTA E++WGGAKH    KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQI++R++F+E  E  D   +  NT+    K++G++        EL +V  E+VRL  TAT PI  VD  G +NGWN K+AELTGLP  EA GK L+  +V + S   V+ ++
Sbjct:  452 KVWRLGVTPSEPQIREIALWLSEYHMDSTSFSTDSLFDAGFPSALSLGDVVCGMASVRVTAKDMVFWFRSHTAAEIRWGGAKHEAGEKDDSRRMHPRSSFKAFLEVVKARSLPWKEYEMDAIHSLQIILRNAFKEDTESLDLNAKAINTRLRDLKIEGINDLKIERMQELEAVTSEIVRLDYTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLL-TLVEDSSTDRVKKML 687          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA4_AVESA (Phytochrome A type 4 OS=Avena sativa GN=PHYA4 PE=1 SV=3)

HSP 1 Score: 243.817 bits (621), Expect = 6.420e-64
Identity = 119/230 (51.74%), Postives = 157/230 (68.26%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            GG+ W +   PTESQ+ DIA+WL + H D TGLSTDSL +AGYPGA+ LG  +CGMA A+I SKD +FWFRSHTA E++WGGAKH     D+  +MHPR SFKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +        N Q    K+ G+ EL +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S   V+ ++
Sbjct:  454 GGKVWRLRNAPTESQIHDIAFWLSDVHRDSTGLSTDSLHDAGYPGASALGDMICGMAVAKINSKDIIFWFRSHTAAEIRWGGAKHDSSDMDDSRRMHPRLSFKAFLEVVKMKSLPWTDYEMDAIHSLQLILRGTLNDASKPKREASLDN-QIGDLKLDGLAELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESSVPVVQRML 681          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYC_ARATH (Phytochrome C OS=Arabidopsis thaliana GN=PHYC PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.430e-63
Identity = 115/226 (50.88%), Postives = 167/226 (73.89%), Query Frame = 3
Query:   15 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESXGAVENLI 692
            W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA   I+ KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+  E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA  PIF VD+SG INGWN+K AE+TGL   +A+GK  + ++V ++S   V+N++
Sbjct:  448 WSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMAAVYISEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWDDMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKP-VSDLVEDDSVETVKNML 667          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHYA_ANASP (Cyanobacterial phytochrome A OS=Anabaena sp. (strain PCC 7120) GN=aphA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 42/131 (32.06%), Postives = 60/131 (45.80%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP---EHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQ 386
            G  C L+G TP    L  +  WL NN  +     TDSL +  YP A        G+    I+ ++++ WFR    + V WGG  + P      D   ++ PR SF+ + E V+  S PW   EI A   L+
Sbjct:  373 GDHCTLIGETPKAEDLVFLVQWLKNNVEEEV-FYTDSLPQV-YPDAERYKNVASGLLAIPISQRNYVLWFRPEVIQTVNWGGDPNQPFEVNKLDGNVRLCPRKSFELWKETVRLTSLPWRYVEIRAALELR 501          
BLAST of FC923092 vs. ExPASy Swiss-Prot
Match: PHY1_SYNY3 (Phytochrome-like protein cph1 OS=Synechocystis sp. (strain PCC 6803) GN=cph1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 44/144 (30.56%), Postives = 67/144 (46.53%), Query Frame = 3
Query:    3 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH---PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEE 425
            G +  LVG TP E  ++ +  WL N         T SL++  YP A        G+    I   +FL WFR    + V WGG  +H      +D   ++HPR SF  + E+V+ +S PW+  EI +  +L+  + +      EE
Sbjct:  373 GEKLILVGETPDEKAVQYLLQWLENREVQDV-FFTSSLSQI-YPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLILRQAEE 514          
The following BLAST results are available for this feature:
BLAST of FC923092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PHYA_SORBI1.250e-6754.35Phytochrome a OS=Sorghum bicolor GN=PHYA PE=2 SV=1[more]
PHYA_ARATH2.132e-6753.95Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1... [more]
PHYA1_TOBAC6.204e-6754.91Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 ... [more]
PHYA_PETCR1.689e-6452.77Phytochrome A OS=Petroselinum crispum GN=PHYA PE=2... [more]
PHYA3_AVESA2.207e-6452.17Phytochrome A type 3 OS=Avena sativa GN=PHYA3 PE=1... [more]
PHYA_SOYBN4.916e-6451.48Phytochrome A OS=Glycine max GN=PHYA PE=2 SV=1[more]
PHYA4_AVESA6.420e-6451.74Phytochrome A type 4 OS=Avena sativa GN=PHYA4 PE=1... [more]
PHYC_ARATH1.430e-6350.88Phytochrome C OS=Arabidopsis thaliana GN=PHYC PE=1... [more]
PHYA_ANASP1.271e-1132.06Cyanobacterial phytochrome A OS=Anabaena sp. (stra... [more]
PHY1_SYNY31.659e-1130.56Phytochrome-like protein cph1 OS=Synechocystis sp.... [more]

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Properties
Property NameValue
Genbank descriptionC31701A04EF StrClemenN Citrus clementina cDNA clone C31701A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923092 ID=FC923092; Name=FC923092; organism=Citrus clementina; type=EST; length=694bp
ATGGTGGGAGATGCTGGCTGGTGGGGGTAACTCCAACTGAATCACAGTTA
AAAGATATTGCATGGTGGCTTCTCAATAATCATGGGGATTGTACAGGGTT
GAGTACTGATAGTTTGGCAGAGGCTGGTTACCCCGGTGCTGCTTTATTGG
GTCAGGCGGTTTGTGGTATGGCTACTGCCAGAATCACTTCAAAGGATTTC
TTATTCTGGTTCAGATCTCACACAGCAAAAGAAGTTAAATGGGGAGGAGC
TAAGCATCACCCAGAGCATAAGGATAACGGTGGCAAAATGCATCCAAGAT
CATCGTTTAAAGCTTTCCTTGAAGTGGTGAAAAATAGGAGTTTTCCTTGG
GAAGTTTCGGAAATCAATGCTATTCACTCTTTGCAAATTGTAATGAGAGA
TTCATTTCAGGAGATGGAGGAAGAAAATGACTCCAAGGTTCAAGGTAATA
CCCAGCAGAATGGCAGTAAGATGCAGGGTGTGGATGAGCTCAGTTCAGTG
GCATGTGAAATGGTTAGATTGATTGAGACAGCGACAGCTCCAATTTTTGG
AGTTGATTCATCTGGTACCATCAATGGGTGGAATGCAAAAGTTGCCGAAT
TGACAGGATTACCAGCTAGTGAAGCCATGGGGAAATCTCTAATTGATGAA
GTAGTTCATGAGGAATCTCANGGAGCTGTTGAAAATCTTATCTG
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