FC923099
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH-IINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIP 493 KIF+GGL T+ + K+F +GEI ++V++ DR+TG+ RG+GFVT AD S D+ +D + II+G+ K + +G+K + F G+P Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGR----KANVNLAYLGAKPRVMQPGFTFGVP 104
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM19_HUMAN (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 53/203 (26.11%), Postives = 95/203 (46.80%), Query Frame = 2 Query: 77 EPMDPES-NEGIVDRDSNDVHKSSDHHP---EDDRSQPHTGDGASPG-KIFIGGLARETSPAQFIKHFGKYGEITD-SVIMKDRKTGQ--PRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKR---------TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHS-TSRSRGFGFITFDTEQ 625 +P +PE+ +G D N + +D+ E++ + + + PG +FI L +T+ + + F K G + S+ K K G GFGFV Y P K ++ H+++G ++E++ T+ + + T KI V IP + E ++ F FGE++ ++ + + T RGFGF+ F T+Q Sbjct: 683 DPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQ 885
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 32/132 (24.24%), Postives = 67/132 (50.76%), Query Frame = 2 Query: 263 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGN 655 F GE+ + +++D+ G G+GFV Y + ++ I + +NG +++ K + S+ K +++ G+P ++ + + +D F+ FG + +++ D +T SRG FI FD ++ + N Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI---NTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFN 168
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM19_MOUSE (Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11 Identity = 55/196 (28.06%), Postives = 87/196 (44.39%), Query Frame = 2 Query: 83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDR-KTGQ--PRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIK--RTIPKGAVGS-------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHS-TSRSRGFGFITFDTEQ 625 +DPE + V+ K + E++ + + G + +FI L T+ F K G I I K + K G GFGFV Y P K ++ H ++G ++E++ K A+ S K T KI V IP N+ E ++ F FGE++ ++ + + T RGFGF+ F T+Q Sbjct: 685 LDPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCT---LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 877
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11 Identity = 44/170 (25.88%), Postives = 82/170 (48.24%), Query Frame = 2 Query: 209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI--INGKQVEIKRTIPKGAVGSK--------------DFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLELA 670 ++I L E + +F FG++GEIT ++KD+ +PRGFGFV YA+ K +++ + GK++ + R K + ++ +F+ + V+++ K F FG + +IM D +S+GFGF+ + T + + + + N+ LA Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11 Identity = 43/161 (26.71%), Postives = 76/161 (47.20%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLEL 667 G +FI L F +G I + +D + G +G+GFV Y + I+ + ++N K+V + I K SK + K +++ + S +++DEF+ F +FGE+ + RD +SRGFGF+ F T ++ + + N E+ Sbjct: 142 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEI 300
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11 Identity = 40/171 (23.39%), Postives = 79/171 (46.20%), Query Frame = 2 Query: 146 DHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGN 655 DH ED R GD + + L + + + F GE+ + +++D+ G G+GFV Y ++ I + +NG +++ K + S+ K +++ G+P ++ + + +D F +FG + +++ D +T SRG FI FD ++ + N Sbjct: 7 DHMAEDCR-----GD-IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI---NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN 168
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11 Identity = 42/174 (24.14%), Postives = 80/174 (45.98%), Query Frame = 2 Query: 134 HKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGN 655 H + P + S +G+ S ++I GL T+ IK YG+I + + D+ T Q +G+GFV + P+ K + NG Q ++ + ++ +++ +P S++E E ++ FG V +I+RD + SRG GF ++ + + ++ N Sbjct: 33 HPMAPPSPSTNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLK-ANGVQAQMAK--------QQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFN 196
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11 Identity = 38/150 (25.33%), Postives = 73/150 (48.67%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGA----VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 G +FI L R F +G I + D K G +G+GFV + + I+ + ++NGK+V + + IP+ +G K ++V ++++ K+FF +G++ +++M +S+GFGF+ F+T +A + Sbjct: 90 GNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED-GKSKGFGFVAFETTEAAE 237 The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bpback to top |