FC923099
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_CAEEL (Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis elegans GN=hrp-1 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25 Identity = 55/146 (37.67%), Postives = 90/146 (61.64%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAV--GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 KIF+GGL T+ + + ++GEITD ++M+D T + RGFGFVT++ + VD ++ HII+GK V+ KR +P+ + TK+++V G+ ED ++F ++G V + +I+ D +T + RGFGF+TFD +VD Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVD 169 HSP 2 Score: 68.9366 bits (167), Expect = 2.661e-11 Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 2 Query: 410 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 VEIK G + +KIFVGG+ S+ +D ++F+ QFGE+ + +MRD +T RSRGFGF+TF + VD Sbjct: 4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVD 78 HSP 3 Score: 67.781 bits (164), Expect = 5.928e-11 Identity = 32/112 (28.57%), Postives = 64/112 (57.14%), Query Frame = 2 Query: 155 PEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGG 487 P DD+++ + S ++++ G+ + + ++F KYG +T S I+ D+ T +PRGFGFVT+ D VD+ V++ +H++NG + ++++ + K + + GG Sbjct: 100 PRDDKNRSESN--VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGG 209
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROAA_MOUSE (Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus GN=Hnrnpab PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24 Identity = 61/162 (37.65%), Postives = 95/162 (58.64%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXK------GNKLEL 667 GK+F+GGL+ +TS +F K+GE+ D I D TG+ RGFGF+ + D S V+KV++ H ++G+ ++ PK A+ K KKIFVGG+ E++ +++F QFGE++ ++ D ++ RGF FITF E V +L K G+K E+ Sbjct: 75 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEI 231
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROAA_HUMAN (Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=1 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24 Identity = 61/163 (37.42%), Postives = 98/163 (60.12%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGI-PSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXK------GNKLEL 667 GK+F+GGL+ +TS +F K+GE+ D I D TG+ RGFGF+ + D + V+KV++ H ++G+ ++ PK A+ K KKIFVGG+ P S E++ +++F +FGE++ ++ D ++ RGF FITF E+ V +L K G+K E+ Sbjct: 69 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEI 226
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24 Identity = 64/178 (35.96%), Postives = 102/178 (57.30%), Query Frame = 2 Query: 128 DVHKSSDHHPEDDRSQPHTGDGASPG---KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXK 649 D K+ + + S HT A+ K+FIGGL+ +T+ +F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFVGG+ E++ +++F FGEV+ ++ D+ T++ RGF FITF E+ V ++ K Sbjct: 69 DASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRDL_RAT (Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus GN=Hnrpdl PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24 Identity = 63/164 (38.41%), Postives = 96/164 (58.54%), Query Frame = 2 Query: 155 PEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 P D S P +G+ K+FIGGL+ +TS ++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR K G + KK+FVGG+ +E++ K++F FGE++ ++ D T+ RGF FIT+ E+ V LL Sbjct: 40 PLDPSSFPTSGN-----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 194
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRDL_MOUSE (Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus GN=Hnrpdl PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24 Identity = 59/148 (39.86%), Postives = 90/148 (60.81%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 GK+FIGGL+ +TS ++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR K G + KK+FVGG+ +E++ K++F FGE++ ++ D T+ RGF FIT+ E+ V LL Sbjct: 29 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 172
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRDL_HUMAN (Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens GN=HNRPDL PE=1 SV=3) HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24 Identity = 59/148 (39.86%), Postives = 90/148 (60.81%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 GK+FIGGL+ +TS ++ ++GE+ D I D TG+ RGFGFV + D + VDKV+E H ++GK ++ KR K G + KK+FVGG+ +E++ K++F FGE++ ++ D T+ RGF FIT+ E+ V LL Sbjct: 148 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 291
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RB87F_DROME (Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24 Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL T+ HF K+G I D V+MKD KT + RGFGF+TY+ ++D H I+G+ VE KR +P+ + S + KK+FVGG+ +E+ +++F FG++ I+ D T + RGF FI FD VD ++ Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRDL_CHICK (Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus GN=HNRPDL PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23 Identity = 58/148 (39.19%), Postives = 90/148 (60.81%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 GK+FIGGL+ +TS ++ ++GE+ D I D TG+ RGFGFV + D + V+KV+E H ++GK ++ KR K G + KK+FVGG+ +E++ K++F FGE++ ++ D T+ RGF FIT+ E+ V LL Sbjct: 30 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 173
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_PONAB (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23 Identity = 54/149 (36.24%), Postives = 89/149 (59.73%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ ++ ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G KK+FVGGI E +D+F ++G++ +I+ D + + RGFGF+TFD VD ++ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170 The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bpback to top |