FC923099

Overview
NameFC923099
Unique NameFC923099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_CAEEL (Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis elegans GN=hrp-1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25
Identity = 55/146 (37.67%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAV--GSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            KIF+GGL   T+     + + ++GEITD ++M+D  T + RGFGFVT++  + VD  ++   HII+GK V+ KR +P+        +  TK+++V G+     ED   ++F ++G V + +I+ D +T + RGFGF+TFD   +VD
Sbjct:   24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVD 169          

HSP 2 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  410 VEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            VEIK     G    +    +KIFVGG+ S+  +D  ++F+ QFGE+ +  +MRD +T RSRGFGF+TF  +  VD
Sbjct:    4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVD 78          

HSP 3 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 32/112 (28.57%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  155 PEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGG 487
            P DD+++  +    S  ++++ G+  + +     ++F KYG +T S I+ D+ T +PRGFGFVT+ D   VD+ V++ +H++NG + ++++ + K  +        +   GG
Sbjct:  100 PRDDKNRSESN--VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVRKGLSKDEMSKAQMNRDRETRGG 209          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROAA_MOUSE (Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus GN=Hnrnpab PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 61/162 (37.65%), Postives = 95/162 (58.64%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXK------GNKLEL 667
            GK+F+GGL+ +TS      +F K+GE+ D  I  D  TG+ RGFGF+ + D S V+KV++   H ++G+ ++     PK A+  K    KKIFVGG+     E++ +++F QFGE++  ++  D   ++ RGF FITF  E  V  +L K      G+K E+
Sbjct:   75 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEI 231          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROAA_HUMAN (Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 61/163 (37.42%), Postives = 98/163 (60.12%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGI-PSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXK------GNKLEL 667
            GK+F+GGL+ +TS      +F K+GE+ D  I  D  TG+ RGFGF+ + D + V+KV++   H ++G+ ++     PK A+  K    KKIFVGG+ P S  E++ +++F +FGE++  ++  D   ++ RGF FITF  E+ V  +L K      G+K E+
Sbjct:   69 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEI 226          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 64/178 (35.96%), Postives = 102/178 (57.30%), Query Frame = 2
Query:  128 DVHKSSDHHPEDDRSQPHTGDGASPG---KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXK 649
            D  K+ +     + S  HT   A+     K+FIGGL+ +T+      +F K+GE+ D  +  D  TG+ RGFGFV + +   VDKV++   H +NGK ++ KR     A+ +K+   KKIFVGG+     E++ +++F  FGEV+  ++  D+ T++ RGF FITF  E+ V  ++ K
Sbjct:   69 DASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRDL_RAT (Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus GN=Hnrpdl PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 63/164 (38.41%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  155 PEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            P D  S P +G+     K+FIGGL+ +TS     ++  ++GE+ D  I  D  TG+ RGFGFV + D + VDKV+E   H ++GK ++ KR   K   G +    KK+FVGG+    +E++ K++F  FGE++  ++  D  T+  RGF FIT+  E+ V  LL
Sbjct:   40 PLDPSSFPTSGN-----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 194          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRDL_MOUSE (Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus GN=Hnrpdl PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 59/148 (39.86%), Postives = 90/148 (60.81%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            GK+FIGGL+ +TS     ++  ++GE+ D  I  D  TG+ RGFGFV + D + VDKV+E   H ++GK ++ KR   K   G +    KK+FVGG+    +E++ K++F  FGE++  ++  D  T+  RGF FIT+  E+ V  LL
Sbjct:   29 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 172          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRDL_HUMAN (Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens GN=HNRPDL PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 59/148 (39.86%), Postives = 90/148 (60.81%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            GK+FIGGL+ +TS     ++  ++GE+ D  I  D  TG+ RGFGFV + D + VDKV+E   H ++GK ++ KR   K   G +    KK+FVGG+    +E++ K++F  FGE++  ++  D  T+  RGF FIT+  E+ V  LL
Sbjct:  148 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 291          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RB87F_DROME (Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 58/149 (38.93%), Postives = 86/149 (57.72%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL   T+      HF K+G I D V+MKD KT + RGFGF+TY+   ++D       H I+G+ VE KR +P+  + S +     KK+FVGG+    +E+  +++F  FG++    I+ D  T + RGF FI FD    VD ++
Sbjct:   25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRDL_CHICK (Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus GN=HNRPDL PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 58/148 (39.19%), Postives = 90/148 (60.81%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            GK+FIGGL+ +TS     ++  ++GE+ D  I  D  TG+ RGFGFV + D + V+KV+E   H ++GK ++ KR   K   G +    KK+FVGG+    +E++ K++F  FGE++  ++  D  T+  RGF FIT+  E+ V  LL
Sbjct:   30 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL 173          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_PONAB (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 54/149 (36.24%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      ++ ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   G        KK+FVGGI     E   +D+F ++G++   +I+ D  + + RGFGF+TFD    VD ++
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170          
The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ROA1_CAEEL9.421e-2537.67Heterogeneous nuclear ribonucleoprotein A1 OS=Caen... [more]
ROAA_MOUSE1.230e-2437.65Heterogeneous nuclear ribonucleoprotein A/B OS=Mus... [more]
ROAA_HUMAN2.099e-2437.42Heterogeneous nuclear ribonucleoprotein A/B OS=Hom... [more]
HNRPD_MOUSE3.580e-2435.96Heterogeneous nuclear ribonucleoprotein D0 OS=Mus ... [more]
HNRDL_RAT3.580e-2438.41Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
HNRDL_MOUSE3.580e-2439.86Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
HNRDL_HUMAN3.580e-2439.86Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
RB87F_DROME6.106e-2438.93Heterogeneous nuclear ribonucleoprotein 87F OS=Dro... [more]
HNRDL_CHICK1.042e-2339.19Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
ROA2_PONAB1.360e-2336.24Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31701A12EF StrClemenN Citrus clementina cDNA clone C31701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bp
GCTCTTGCGATAACCTTCAAATAAAACTTCTCTGTCTTCTCCTTCTTCAC
CGCCGTTATAACGCCGCTTAAATCCAGAACCCATGGACCCAGAATCTAAT
GAAGGAATTGTTGACAGAGATTCTAACGATGTTCATAAATCGTCAGACCA
CCACCCAGAAGATGACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCC
CTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAGACGTCGCCAGCTCAA
TTTATCAAGCATTTCGGTAAATATGGTGAAATTACGGATTCTGTGATAAT
GAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATG
CTGATCCCTCTGTAGTTGATAAAGTCATTGAAGACACTCACATTATTAAT
GGGAAACAGGTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTC
TAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAG
TGAATGAAGATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAA
GAGCACCAAATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGG
ATTTATCACTTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGNCAAGG
GGAACAAGCTTGAGTTGGCTG
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