FC923099

Overview
NameFC923099
Unique NameFC923099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 54/149 (36.24%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      ++ ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   G        KK+FVGGI     E   +D+F ++G++   +I+ D  + + RGFGF+TFD    VD ++
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 54/149 (36.24%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      ++ ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   G        KK+FVGGI     E   +D+F ++G++   +I+ D  + + RGFGF+TFD    VD ++
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23
Identity = 54/149 (36.24%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      ++ ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   G        KK+FVGGI     E   +D+F ++G++   +I+ D  + + RGFGF+TFD    VD ++
Sbjct:   10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_RAT (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 54/148 (36.49%), Postives = 88/148 (59.46%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 640
            K+FIGGL+ ET+      ++ ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   G        KK+FVGGI     E   +D+F ++G++   +I+ D  + + RGFGF+TFD    VD +
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 67/191 (35.08%), Postives = 105/191 (54.97%), Query Frame = 2
Query:   92 ESNEGIVDRDSNDVHK----SSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXK 649
            ES    +D   N+  +    SS  H E   +Q          K+FIGGL+ +T+      +F K+GE+ D  +  D  TG+ RGFGFV + +   VDKV++   H +NGK ++ KR     A+ +K+   KKIFVGG+     E++ +++F  FGEV+  ++  D+ T++ RGF FITF  E+ V  ++ K
Sbjct:   62 ESEGAKIDASKNEEDEGHSNSSPRHSEAATAQ------REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 53/149 (35.57%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ +T+      ++ ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   G        KK+FVGGI     E   +D+F ++G++   +I+ D  + + RGFGF+TFD    VD ++
Sbjct:   10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 62/178 (34.83%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  128 DVHKSSDHHPEDDRSQPHTGDGASPG---KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXK 649
            D  K+ +     + S  HT    +     K+FIGGL+ +T+      +F K+G++ D  +  D  TG+ RGFGFV + +   VDKV++   H +NGK ++ KR     A+ +K+   KKIFVGG+     E++ +++F  FGEV+  ++  D+ T++ RGF FITF  E+ V  ++ K
Sbjct:   67 DASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRDL_XENTR (Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus tropicalis GN=hnrpdl PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23
Identity = 58/148 (39.19%), Postives = 87/148 (58.78%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            GK+FIGGL+ +TS     ++  ++GE+ D  I  D  TG+ RGFGFV + D   VDKV+E   H ++GK ++ KR   K   G +    KK+FVGG+     E++ K +F  FGE++  ++  D  T+  RGF F+T+  E+ V  LL
Sbjct:   26 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLL 169          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNDLA_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis GN=hnrpdl-A PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23
Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            GK+FIGGL+ +TS     ++  ++GE+ D  I  D  TG+ RGFGFV + D   VDKV+E + H ++GK ++ KR   K   G +    KK+FVGG+     E++ K +F  FGE++  ++  D  T+  RGF F+T+  E+ V  LL
Sbjct:   26 GKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLL 169          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNDLB_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis GN=hnrpdl-B PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22
Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ +TS     ++  ++GE+ D  I  D  TG+ RGFGFV + D   VDKV+E   H ++GK ++ KR   K   G +    KK+FVGG+     E++ K +F  FGE++  ++  D  T+  RGF F+T+  E+ V  LL
Sbjct:   35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA--KALQGKE--PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLL 177          

HSP 2 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 40/113 (35.40%), Postives = 59/113 (52.21%), Query Frame = 2
Query:  200 PGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQ 535
            P K+F+GGL+ ET+  Q  ++FG +GEI +  +  D KT + RGF FVTY D   V K++E   H I   + EIK   PK     +  K +K   GG         + +++ Q
Sbjct:  118 PKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKEVYRQQQQKQQKGGRGGTRGRGRGQGYSNYYDQ 230          
The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ROA2_MOUSE1.360e-2336.24Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_HUMAN1.360e-2336.24Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_BOVIN1.360e-2336.24Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_RAT1.777e-2336.49Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
HNRPD_HUMAN1.777e-2335.08Heterogeneous nuclear ribonucleoprotein D0 OS=Homo... [more]
ROA2_SAGOE2.320e-2335.57Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
HNRPD_RAT2.320e-2334.83Heterogeneous nuclear ribonucleoprotein D0 OS=Ratt... [more]
HNRDL_XENTR3.958e-2339.19Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
HNDLA_XENLA5.169e-2339.19Heterogeneous nuclear ribonucleoprotein D-like-A O... [more]
HNDLB_XENLA1.504e-2238.78Heterogeneous nuclear ribonucleoprotein D-like-B O... [more]

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Properties
Property NameValue
Genbank descriptionC31701A12EF StrClemenN Citrus clementina cDNA clone C31701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bp
GCTCTTGCGATAACCTTCAAATAAAACTTCTCTGTCTTCTCCTTCTTCAC
CGCCGTTATAACGCCGCTTAAATCCAGAACCCATGGACCCAGAATCTAAT
GAAGGAATTGTTGACAGAGATTCTAACGATGTTCATAAATCGTCAGACCA
CCACCCAGAAGATGACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCC
CTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAGACGTCGCCAGCTCAA
TTTATCAAGCATTTCGGTAAATATGGTGAAATTACGGATTCTGTGATAAT
GAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATG
CTGATCCCTCTGTAGTTGATAAAGTCATTGAAGACACTCACATTATTAAT
GGGAAACAGGTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTC
TAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAG
TGAATGAAGATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAA
GAGCACCAAATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGG
ATTTATCACTTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGNCAAGG
GGAACAAGCTTGAGTTGGCTG
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