FC923099

Overview
NameFC923099
Unique NameFC923099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RO22_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22
Identity = 52/149 (34.90%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+       + ++G++TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   A        KK+FVGGI     E   +++F ++G+++  +I+ D  + + RGFGF+TF+    VD ++
Sbjct:   10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158          

HSP 2 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 38/110 (34.55%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  170 SQPHTGDG--------------ASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 436
            ++PHT DG              A PG      K+F+GG+  +T      ++F +YG+I  + I+ D+++G+ RGFGFVT+ D   VDK V++  H ING   E+++ + K
Sbjct:   69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSK 178          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RO21_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.715e-22
Identity = 52/149 (34.90%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      ++ ++G +TD V+M+D  + + RGFGFVT++  + VD  +    H I+G+ VE KR + +   A        KK+FVGGI     E   +++F ++G++   +I+ D  + + RGF F+TFD    VD ++
Sbjct:   10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA0_HUMAN (Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 54/146 (36.99%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            K+FIGGL  +TS +    HF  +G +TD V++ + +T + R FGFVTY++    D  +  + H ++G  VE+KR + +   A      K KK+FVGG+   V E +  + F QFG V++ +I+ D  + + RGFGF+ F    A D
Sbjct:    8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAAD 153          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 54/191 (28.27%), Postives = 93/191 (48.69%), Query Frame = 2
Query:   83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            M+P+ + G     SN    ++ + P   ++   T D  S   + +  L +  +  +F   FG  GEI    +++D+ TGQ  G+GFV Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++ + E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:    1 MEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 54/191 (28.27%), Postives = 93/191 (48.69%), Query Frame = 2
Query:   83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            M+P+ + G     SN    ++ + P   ++   T D  S   + +  L +  +  +F   FG  GEI    +++D+ TGQ  G+GFV Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++ + E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:   13 MEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 54/191 (28.27%), Postives = 93/191 (48.69%), Query Frame = 2
Query:   83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            M+P+ + G     SN    ++ + P   ++   T D  S   + +  L +  +  +F   FG  GEI    +++D+ TGQ  G+GFV Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++ + E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:    8 MEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: TADBP_XENTR (TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 53/183 (28.96%), Postives = 91/183 (49.73%), Query Frame = 2
Query:  149 HHPEDDRSQPHTGDGASPGKI----------FIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAV-----DDLLXKG 652
            ++P+D++ +    D +S  KI           + GL  +T+      +F  +GE+    + KD KTG  +GFGFV +AD     KV+   H+I+G+  + K  +P      +  +++K+FVG     ++ +E + FF Q+GEV +  I +       R F F+TF  +Q       +DL+ KG
Sbjct:   77 NYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCK--LPNSKSPDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLCGEDLIIKG 252          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16
Identity = 46/153 (30.07%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            S   + +  L +  +  +F   FG  G+I    +++D+ TGQ  G+GFV Y+DP+  DK I   + +NG +++ K   +      S   +   ++V G+P ++++ E +  F Q+G +   +I+ D +T  SRG GFI FD     E+A+  L
Sbjct:   37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 43/152 (28.29%), Postives = 83/152 (54.61%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA---VGSKDFKTK-KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+F+G L  +    +    F   G +  + ++ +R+T + RGFGFVT +     +K +E  + + ++G+Q+ + +  P+G+       DF+   +++VG +P  V+    +  F + G+V   +++ D  T RSRGFGF+T  +E  V+D +
Sbjct:   56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAI 207          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 2
Query:  197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            S   + +  L +  +  +F   FG  GEI    +++D+ TGQ  G+GFV Y DP+  DK I   + +NG +++ K   +      S   +   ++V  +P ++N+ E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:   32 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 181          
The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
RO22_XENLA1.964e-2234.90Heterogeneous nuclear ribonucleoprotein A2 homolog... [more]
RO21_XENLA5.715e-2234.90Heterogeneous nuclear ribonucleoprotein A2 homolog... [more]
ROA0_HUMAN2.837e-2136.99Heterogeneous nuclear ribonucleoprotein A0 OS=Homo... [more]
ELAV4_RAT5.536e-1728.27ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE5.536e-1728.27ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN5.536e-1728.27ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
TADBP_XENTR3.588e-1628.96TAR DNA-binding protein 43 OS=Xenopus tropicalis G... [more]
ELAV3_MOUSE7.994e-1630.07ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ROC1_SPIOL1.364e-1528.2928 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ELAV3_XENLA1.364e-1530.72ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]

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Properties
Property NameValue
Genbank descriptionC31701A12EF StrClemenN Citrus clementina cDNA clone C31701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bp
GCTCTTGCGATAACCTTCAAATAAAACTTCTCTGTCTTCTCCTTCTTCAC
CGCCGTTATAACGCCGCTTAAATCCAGAACCCATGGACCCAGAATCTAAT
GAAGGAATTGTTGACAGAGATTCTAACGATGTTCATAAATCGTCAGACCA
CCACCCAGAAGATGACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCC
CTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAGACGTCGCCAGCTCAA
TTTATCAAGCATTTCGGTAAATATGGTGAAATTACGGATTCTGTGATAAT
GAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATG
CTGATCCCTCTGTAGTTGATAAAGTCATTGAAGACACTCACATTATTAAT
GGGAAACAGGTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTC
TAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAG
TGAATGAAGATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAA
GAGCACCAAATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGG
ATTTATCACTTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGNCAAGG
GGAACAAGCTTGAGTTGGCTG
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