FC923105

Overview
NameFC923105
Unique NameFC923105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_GLOVI (NAD(P)H-quinone oxidoreductase subunit N OS=Gloeobacter violaceus GN=ndhN PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.014e-19
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  252 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQE 665
            R+++DVEKH +IA++ P E                    ++A+GLGD    L + + V PAH+GK+    +  PPE+   +  LP SAKG V+WIIE KVLS  EL+ L  LP   PK++VI E G+     W P ++
Sbjct:   13 RFVADVEKHSSIALWAPPEGGIEGNYQRRLRGIGYRTQIITAKGLGDISRFLLESHGVRPAHLGKKDKRVFTLPPELAIYMDTLPASAKGFVLWIIEGKVLSLFELESLVGLPAAVPKLKVIVEVGSDYNIRWMPLEQ 150          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_MICAN (NAD(P)H-quinone oxidoreductase subunit N OS=Microcystis aeruginosa (strain NIES-843) GN=ndhN PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.861e-19
Identity = 50/141 (35.46%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  255 WLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKP 656
            ++ D+E++ A+ +Y P E                    ++ARGLGD    LT ++ V P H+GK+ I R       ++ PP   Y+L  LPP +KGLV+WIIE+ VLS  E Q+L  L    P+++ + E G  R F W+P
Sbjct:   10 FIRDLEQYGALGVYAPLEGGYEGRYQRRLRATGYNVLHITARGLGDLSAYLTGIHGVRPPHLGKKNIGREAAVGPVYFIPPIATYQLENLPPKSKGLVIWIIESFVLSSEEKQYLINLSQQEPRLKFVLELGGERYFRWQP 150          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_SYNP6 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhN PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 52/142 (36.62%), Postives = 71/142 (50.00%), Query Frame = 3
Query:  252 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARW-------YFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKP 656
            ++L  +E+  A+A+Y P E                     SARGLGDP   L  ++ V P H+GKQ I          Y  P V Y L  LP +AKGLV+W++E  VLS  EL +   LP   P+++V+ E G  R F W+P
Sbjct:    9 KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRPPHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLPQAEPRLKVVIEMGGDRGFSWQP 150          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_SYNP2 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhN PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 50/146 (34.25%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  255 WLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIA--------RWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQEI 668
            ++  VEK  A+A+Y P E                   +L+ARGLGD    LT+ + + P H+GK+ IA        R+Y P    Y+L  LP  +KG+++WIIE  VLS+ E ++L  L    P+++V+ E G  R+F +KP  ++
Sbjct:   10 FIRTVEKSGAVAVYAPLEGGFEGRYVRRLRCSGYSVVNLTARGLGDVAAYLTQYHGIRPPHLGKKDIAGSGAAVGLRYYVPGIASYQLENLPQKSKGIILWIIEGFVLSRQEQEYLVSLTQDNPQIKVVVEMGGDRQFSFKPLADL 155          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_SYNE7 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC 7942) GN=ndhN PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 52/142 (36.62%), Postives = 71/142 (50.00%), Query Frame = 3
Query:  252 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARW-------YFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKP 656
            ++L  +E+  A+A+Y P E                     SARGLGDP   L  ++ V P H+GKQ I          Y  P V Y L  LP +AKGLV+W++E  VLS  EL +   LP   P+++V+ E G  R F W+P
Sbjct:    9 KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRPPHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLPQAEPRLKVVIEMGGDRGFSWQP 150          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_SYNY3 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechocystis sp. (strain PCC 6803) GN=ndhN PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 52/137 (37.96%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  267 VEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKP 656
            +E   A+A+Y P E                    LSARGLGD E  L +V+ V PAH+GK+ IA+       ++  P   Y+L  LP  +KGLV+WI+E  +LS++E+Q L  L    PK++V+ E G  R F W+P
Sbjct:   17 LENDGALAVYAPLEGGYEGRYQRRLRANGYASISLSARGLGDVEAYLMQVHGVRPAHLGKKNIAQEGAVGPIYFAQPIAGYQLENLPAQSKGLVLWILEGYILSQTEIQDLISLTKRVPKLKVVLEMGGDRVFRWQP 153          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_SYNJB (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. GN=ndhN PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 44/137 (32.12%), Postives = 67/137 (48.91%), Query Frame = 3
Query:  252 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQ 662
            +++  +E+  A+AIY   E                    LS++G+GD  + LT+++ V PA +GK     ++FP  ++   A LPP AKGLV W  E  V S+ EL +L  L      V+ + E G  R   W+P Q
Sbjct:    9 KFVQQLEQAGALAIYVTPEGGSEGHYLRRLRGAGYEVVTLSSKGIGDLASYLTRIHGVRPATLGKSERRTYFFPALIEQYRATLPPKAKGLVFWFYEGHVFSQQELSYLVKLSREDKGVKFVVELGRERSIRWQPLQ 145          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_SYNJA (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 43/137 (31.39%), Postives = 66/137 (48.18%), Query Frame = 3
Query:  252 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQ 662
            +++  +E+  A+AI+   E                    LS++G+GD  + LT  + V PA +GK     +++P  ++   A LPP AKGLV W  E  VLS+ EL +L  L      V+ + E G  R   W+P Q
Sbjct:    9 KFVQQLEQCGALAIFVTPEGGSEGHYLRRLRGAGYEVVTLSSKGIGDLASYLTSSHGVRPATLGKSQRRTYFYPSLIEQYRATLPPKAKGLVFWFYEGHVLSRQELSYLVKLSQEDKGVKFVVELGRERSIRWQPLQ 145          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_SYNPX (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain WH8102) GN=ndhN PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 3
Query:  264 DVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKG---LVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKP 656
            D+E H  +A++ P E                     SARGLGDPE  LT+ + + P H+G Q + R     EV   +  L     G   + +W++E +VLS+SEL+ L  L +  P++R+I E G  R   W+P
Sbjct:   13 DLEAHGCLAVHAPLEGGAETRLLRRLRGAGYRTRLWSARGLGDPEVFLTQKHGIRPPHLGHQSVGRGAAVGEVQEVVPQLGDLLDGDAQVALWLLEGQVLSQSELRSLCDLCSREPRLRIIVEMGGARSLRWQP 146          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_PROM5 (NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus (strain MIT 9515) GN=ndhN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 44/135 (32.59%), Postives = 68/135 (50.37%), Query Frame = 3
Query:  261 SDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPP----SAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWK 653
            +D++K+K +A++ P E                     SARGLGDPE  L  ++ + P H+G Q I R     EV   +         + K  ++W++E +VLS+SEL+ L  LPT   K++++ E G  RK  WK
Sbjct:   12 NDLKKNKCLAMFAPLEGGYETRLLRRMRAKGFKTYITSARGLGDPEVFLLNLHGIRPPHLGHQSIGRNGALGEVQQVIPQASELFNENDKDKLLWLLEGQVLSQSELENLIKLPTADNKLKIVVEMGGSRKLEWK 146          
The following BLAST results are available for this feature:
BLAST of FC923105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NDHN_GLOVI2.014e-1938.41NAD(P)H-quinone oxidoreductase subunit N OS=Gloeob... [more]
NDHN_MICAN5.861e-1935.46NAD(P)H-quinone oxidoreductase subunit N OS=Microc... [more]
NDHN_SYNP63.799e-1836.62NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNP23.799e-1834.25NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNE73.799e-1836.62NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNY31.105e-1737.96NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNJB8.758e-1532.12NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNJA1.265e-1331.39NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNPX1.071e-1232.84NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_PROM51.826e-1232.59NAD(P)H-quinone oxidoreductase subunit N OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionC31701B06EF StrClemenN Citrus clementina cDNA clone C31701B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923105 ID=FC923105; Name=FC923105; organism=Citrus clementina; type=EST; length=669bp
GAAAGCAACACAAGCTTCAATTAAGCTAAAAGAAATAGATGGCTGCAGCA
CCTTGCTTGCACTATGGGACACCTGCCTCCATCAAAATCCAACAGAAGCA
GCAACCAACACGAAACTGGATGATGATGCAAGGATTGAGAAGGAGAAATG
GTAAGGCATCTAAAAGAGTTGGAGTGACCAATTGTAGTGGTAATAGTGGC
ATTGAAATAGGGGACTTCATTGGAGGGGATCTGCTAAAACCTGATCTGGG
GCGTTGGCTTTCAGATGTGGAGAAGCACAAAGCCATTGCCATTTATACAC
CACATGAGGGTGGATATGAGGGCCGTTATCTTAATCGTCTCAGATACCTG
GGCTACTACTTCCTTGACCTTAGTGCTCGCGGCCTTGGTGATCCTGAAAC
TACTCTCACTAAAGTTTACCCTGTTTGCCCTGCTCATGTAGGAAAGCAAC
CAATAGCTAGGTGGTATTTCCCACCTGAAGTCGATTACAGGCTTGCTGCA
TTGCCCCCAAGTGCAAAAGGGCTTGTAGTCTGGATAATTGAAGCCAAGGT
TCTGTCAAAGTCAGAGTTGCAGTTCCTTGCTTTGCTTCCTACACTCCGGC
CAAAAGTCAGAGTCATTGCAGAGTGTGGAAACTGGAGGAAGTTCATGTGG
AAGCCTNCTCAAGAAATTG
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