FC923107

Overview
NameFC923107
Unique NameFC923107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14272 contig Ccv1_Contig14272:67..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4B_PIG (RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
[Close]
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4B_MOUSE (RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
[Close]
BLAST of FC923107 vs. ExPASy Swiss-Prot
Match: RBM4B_HUMAN (RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 2 
Query:   44 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVE 538
            M  +F GN   +A + ++  LF +YGKV   D+   + F++++D+  AEDAIR L    +   G  + VE +K++                  ++ S  L V N  P  T  ++L   FE YG +I   I +++AFV  E  EDA  A+   + ++   + + V+
Sbjct:    1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLH--HYKLHGVNINVEASKNK------------------SKASTKLHVGNISPTCT-NQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 144
The following BLAST results are available for this feature:
BLAST of FC923107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RBM4B_PIG2.324e-1128.48RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2... [more]
RBM4B_MOUSE2.324e-1128.48RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE... [more]
RBM4B_HUMAN2.324e-1128.48RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE... [more]

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Properties
Property NameValue
Genbank descriptionC31701B08EF StrClemenN Citrus clementina cDNA clone C31701B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923107 ID=FC923107; Name=FC923107; organism=Citrus clementina; type=EST; length=722bp
GAGATCACATTCACAGCTATCAATCGCCGCTTTCGAAGCTATGATGAGGC
CTATCTTCTGTGGGAACTTTGAGTATGATGCTCGTCAGTCTGATCTGGAG
CGGCTTTTCAGAAGATATGGAAAAGTTGATAGAGTGGATATGAAGTCTGG
ATTTGCATTTATCTATATGGATGATGAGAGAGATGCTGAGGATGCAATTC
GAGGGCTCGATCGAACTGAATTCGGTCGTAAGGGACGCAGACTTCGTGTT
GAATGGACAAAGCATGAACGAGGAATCAGAAGGCCTGGGGGGGGTTCAAG
CGCAAGAAGACCTTCAACAAATACAAGACCTTCAAAGACCTTGTTTGTCA
TTAATTTTGATCCATATCATACGCGCACCAGGGACTTAGAAAGGCACTTT
GAGCCATATGGAAAAATAATAAGTGTTAGGATCAGAAGGAATTTTGCATT
TGTTCAATATGAAGTGCAGGAGGATGCCACCAGAGCATTGGATGCTACAA
ACATGAGCAAGTTGACGGATCGAGTTATTTCAGTGGAATATGCAGTTCGT
GATGACGATGACCGGAGAAATGGACACAGTCCTGATAGAAATCGCGATAG
GTCACCAGATAGGGGTAGGAGGAGATCTCCAAGTCCCTATAGAAGGGAAA
GAGGTAGTCCTGATTATGGCCGTGGCTCTAGCCGAAGTCTTACAGGAGAG
AGAGGGGTAGCCCTGATTATGG
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