FC923108

Overview
NameFC923108
Unique NameFC923108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.213e-48
Identity = 93/191 (48.69%), Postives = 130/191 (68.06%), Query Frame = 2
Query:    5 GTAPVKPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDK 577
            GT P     G  +A+K    G +QG  E+  E+  L  + H N+VKL+G+C +  +++LVYE++P GSL + L  K  + L W+ R+KIALG+ KGLA+LHE A+ P+I+RD K++NILLD    AK++DFGL+K   +  K HV+T+V GT GY  PEY MT  LT KSDVY FGVV+LE+LTG+  +D+
Sbjct:  651 GTLP----NGQVIAIKRAQQGSMQGAFEFKTEIELLSRVHHKNVVKLLGFCFDQKEQMLVYEYIPNGSLRDGLSGKNGVKLDWTRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVADFGLSKLVGDPEKAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGKSPIDR 837          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 7.158e-48
Identity = 101/201 (50.25%), Postives = 136/201 (67.66%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLP--LPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHL 628
            G  VAVK  +    QG +E+  E+N L  + H NLV L+GYC E DQ++LVY FM  GSL + L+ + S    L W  R+ IALGAA+GLA+LH    + VI+RD K+SNILLD    AK++DFG +K AP++G ++VS  V GT GY  PEY  T  L+ KSDV+SFGVVLLE+++GR  ++  RP  E +LVEWA+P++
Sbjct:  618 GQEVAVKVRSSTSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRIEWSLVEWAKPYI 818          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.348e-48
Identity = 98/197 (49.75%), Postives = 129/197 (65.48%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLP-WSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHL 628
            VAVK L+    QG+KE+ AEV+ L  + H NLV LVGYC E D   L+YEF+P G L  HL  KG  P+  W  R++IA  AA GL +LH     P+++RD KT+NILLD  Y AKL+DFGL++  P  G++HVST + GT GY  PEY  T  L+ KSDVYSFG+VLLEM+T +  +D+NR   + ++ +W    L
Sbjct:  605 VAVKLLSQSSTQGYKEFKAEVDLLLRVHHTNLVSLVGYCDEGDHLALIYEFVPNGDLRQHLSGKGGKPIVNWGTRLRIAAEAALGLEYLHIGCTPPMVHRDVKTTNILLDEHYKAKLADFGLSRSFPVGGESHVSTVIAGTPGYLDPEYYHTSRLSEKSDVYSFGIVLLEMITNQAVIDRNR--RKSHITQWVGSEL 799          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.221e-47
Identity = 102/207 (49.28%), Postives = 138/207 (66.67%), Query Frame = 2
Query:   35 LTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFR----KGSLPLP---WSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLXD 634
            L  A+K L+    Q   E+LA+V+ +  L H N V+L+GYC++ + R+L YEF   GSL + L      KG+ P P   W  R+KIA+GAA+GL +LHE+A   +I+RD K+SN+LL  D  AK++DF L+  AP+      STRV+GT+GY APEY MTG L +KSDVYSFGVVLLE+LTGR+ +D   P G+ +LV WA P L +
Sbjct:   96 LPSAIKKLD-SNKQPDNEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRILSYEFANNGSLHDILHGRKGVKGAQPGPVLSWYQRVKIAVGAARGLEYLHEKANPHIIHRDIKSSNVLLFEDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHRLPRGQQSLVTWATPKLSE 301          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.720e-47
Identity = 93/199 (46.73%), Postives = 139/199 (69.85%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGL--QGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFR---KGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEW 613
            G  +AVK + +G +  +G  E+ +E+  L  + H +LV L+GYC++ +++LLVYE+MP+G+L  HLF    +G  PL W  R+ +AL  A+G+ +LH  A +  I+RD K SNILL  D  AK++DFGL + APE GK  + TR+ GT+GY APEY +TG +T+K DVYSFGV+L+E++TGR+S+D+++P    +LV W
Sbjct:  610 GTKIAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWSEEGLKPLLWKQRLTLALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPE-GKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRKSLDESQPEESIHLVSW 807          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.552e-47
Identity = 100/201 (49.75%), Postives = 136/201 (67.66%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLP--LPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHL 628
            G  VAVK  +    QG +E+  E+N L  + H NLV L+GYC E DQ++LVY FM  GSL + L+ + +    L W  R+ IALGAA+GLA+LH    + VI+RD K+SNILLD    AK++DFG +K AP++G ++VS  V GT GY  PEY  T  L+ KSDV+SFGVVLLE+++GR  ++  RP  E +LVEWA+P++
Sbjct:  617 GQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRVEWSLVEWAKPYI 817          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.640e-47
Identity = 94/195 (48.21%), Postives = 127/195 (65.13%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWA 616
            G  VAVK  N    QG  E+  E+  L    H +LV L+GYC E+++ +L+YE+M  G++++HL+  G   L W  R++I +GAA+GL +LH    KPVI+RD K++NILLD ++ AK++DFGL+K  PE  +THVST V G++GY  PEY     LT KSDVYSFGVVL E+L  R  +D   P    NL EWA
Sbjct:  507 GTKVAVKRGNPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENGTVKSHLYGSGLPSLTWKQRLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWA 701          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.034e-46
Identity = 94/195 (48.21%), Postives = 126/195 (64.62%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWA 616
            G  VAVK  N    QG  E+  E+  L    H +LV L+GYC E+++ +LVYE+M  G+L++HL+  G L L W  R++I +G+A+GL +LH    KPVI+RD K++NILLD +  AK++DFGL+K  PE  +THVST V G++GY  PEY     LT KSDVYSFGVV+ E+L  R  +D        NL EWA
Sbjct:  504 GTKVAVKRANPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTLKSHLYGSGLLSLSWKQRLEICIGSARGLHYLHTGDAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVMFEVLCARPVIDPTLTREMVNLAEWA 698          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.034e-46
Identity = 96/192 (50.00%), Postives = 131/192 (68.23%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF-RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEW 613
            VAVK L+H   QG+K++ AEV  L  + H NLV LVGYC E D+  L+YE+M  G L+ H+  ++G   L W  R+KIAL AA+GL +LH   +  +++RD KT+NILL+  ++ KL+DFGL++  P +G+THVST V GT GY  PEY  T  LT KSDVYSFGVVLL M+T +  +D+NR   + ++ EW
Sbjct:  602 VAVKMLSHSSAQGYKQFKAEVELLLRVHHKNLVGLVGYCEEGDKLALIYEYMANGDLDEHMSGKRGGSILNWGTRLKIALEAAQGLEYLHNGCKPLMVHRDVKTTNILLNEHFDTKLADFGLSRSFPIEGETHVSTVVAGTIGYLDPEYYRTNWLTEKSDVYSFGVVLLVMITNQPVIDQNRE--KRHIAEW 791          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.350e-46
Identity = 96/195 (49.23%), Postives = 126/195 (64.62%), Query Frame = 2
Query:    2 NGTAPVKPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF-RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNR 583
            NGT P+        AVK L+   +QG+KE+ AEV  L  + H NLV LVGYC E+    L+YE+ P G L+ HL   +G  PL WS R+KI +  A+GL +LH   + P+++RD KT+NILLD  + AKL+DFGL++  P  G+THVST V GT GY  PEY  T  L  KSDVYSFG+VLLE++T R  + + R
Sbjct:  593 NGTQPI--------AVKLLSQSSVQGYKEFKAEVELLLRVHHVNLVSLVGYCDEESNLALLYEYAPNGDLKQHLSGERGGSPLKWSSRLKIVVETAQGLEYLHTGCKPPMVHRDVKTTNILLDEHFQAKLADFGLSRSFPVGGETHVSTAVAGTPGYLDPEYYRTNRLNEKSDVYSFGIVLLEIITSRPVIQQTR 779          
The following BLAST results are available for this feature:
BLAST of FC923108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y5977_ARATH3.213e-4848.69Probable leucine-rich repeat receptor-like protein... [more]
NORK_MEDTR7.158e-4850.25Nodulation receptor kinase OS=Medicago truncatula ... [more]
Y5596_ARATH9.348e-4849.75Probable LRR receptor-like serine/threonine-protei... [more]
Y2706_ARATH1.221e-4749.28Probable receptor-like protein kinase At2g47060 OS... [more]
TMK1_ARATH2.720e-4746.73Probable receptor protein kinase TMK1 OS=Arabidops... [more]
NORK_PEA3.552e-4749.75Nodulation receptor kinase OS=Pisum sativum GN=NOR... [more]
HERK_ARATH4.640e-4748.21Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
Y5597_ARATH1.034e-4648.21Probable receptor-like protein kinase At5g59700 OS... [more]
Y5181_ARATH1.034e-4650.00Probable LRR receptor-like serine/threonine-protei... [more]
Y2289_ARATH1.350e-4649.23Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC31701B09EF StrClemenN Citrus clementina cDNA clone C31701B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923108 ID=FC923108; Name=FC923108; organism=Citrus clementina; type=EST; length=636bp
GAATGGAACTGCTCCAGTGAAACCCGGTACTGGGCTTACTGTTGCAGTTA
AAACCTTAAATCATGGTGGACTTCAGGGACATAAAGAGTGGCTGGCGGAA
GTTAATTTCCTTGGCAACCTCCTCCATCCCAATTTGGTTAAATTGGTTGG
ATACTGCATCGAAGATGATCAAAGGCTGCTGGTATATGAGTTTATGCCTC
GAGGGAGTTTGGAAAACCACCTCTTCAGAAAAGGGTCCTTGCCACTTCCA
TGGTCTATCAGAATGAAGATTGCACTTGGTGCTGCTAAGGGTCTTGCCTT
TCTTCATGAAGAAGCTGAAAAACCTGTGATATATCGTGATTTCAAAACAT
CAAATATTTTATTAGATGCGGATTACAATGCCAAACTCTCTGATTTTGGA
CTTGCCAAAGACGCCCCAGAGGATGGTAAAACACATGTATCTACTCGAGT
AATGGGAACGTATGGATATGCTGCTCCAGAGTATGTGATGACTGGACATT
TGACATCAAAGAGTGATGTCTATAGCTTTGGAGTAGTTTTACTTGAAATG
TTGACTGGACGAAGATCCATGGATAAAAACCGACCAAATGGGGAACACAA
CCTTGTGGAATGGGCAAGACCGCATCTTGNGGACAA
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