FC923108

Overview
NameFC923108
Unique NameFC923108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: PAM74_ARATH (Probable LRR receptor-like serine/threonine-protein kinase PAM74 OS=Arabidopsis thaliana GN=PAM74 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.671e-45
Identity = 94/192 (48.96%), Postives = 126/192 (65.62%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRK-GSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEW 613
            VAVK L+    QG+K + AEV+ L  + H NLV LVGYC E D   L+YEF+P+G L  HL  K G   + W  R++IAL AA GL +LH     P+++RD KT+NILLD    AKL+DFGL++  P  G+TH+ST V GT GY  PEY  T  L  KSDVYSFG+VLLE++T +  +D++R   + ++ +W
Sbjct:  604 VAVKVLSQSSSQGYKHFKAEVDLLLRVHHTNLVSLVGYCDERDHLALIYEFLPKGDLRQHLSGKSGGSFINWGNRLRIALEAALGLEYLHSGCTPPIVHRDIKTTNILLDEQLKAKLADFGLSRSFPIGGETHISTVVAGTPGYLDPEYYQTTRLGEKSDVYSFGIVLLEIITNQPVIDQSR--SKSHISQW 793          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: RLK7_ARATH (Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.407e-45
Identity = 94/192 (48.96%), Postives = 128/192 (66.67%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPL-PWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEW 613
            VAVK L+    QG KE+ AEV+ L  + H NLV LVGYC E D   LVYEF+P G L+ HL  KG   +  WSIR++IAL AA GL +LH     P+++RD KT+NILLD ++ AKL+DFGL++    +G++  ST + GT GY  PE   +G L  KSDVYSFG+VLLEM+T +  +  N+ +G+ ++ +W
Sbjct:  589 VAVKVLSQSSTQGSKEFKAEVDLLLRVHHTNLVSLVGYCCEGDYLALVYEFLPNGDLKQHLSGKGGNSIINWSIRLRIALEAALGLEYLHIGCTPPMVHRDVKTANILLDENFKAKLADFGLSRSFQGEGESQESTTIAGTLGYLDPECYHSGRLGEKSDVYSFGIVLLEMITNQPVI--NQTSGDSHITQW 778          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y1518_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 9.674e-45
Identity = 99/202 (49.01%), Postives = 128/202 (63.37%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSL-ENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLXD 634
            G  VAVK L+H   QG+KE+ AEV  L  + H +LV LVGYC + D   L+YE+M  G L EN   ++G   L W  RM+IA+ AA+GL +LH     P+++RD KT+NILL+    AKL+DFGL++  P DG+ HVST V GT GY  PEY  T  L+ KSDVYSFGVVLLE++T +  +DK R           RPH+ D
Sbjct:  605 GAEVAVKMLSHSSAQGYKEFKAEVELLLRVHHRHLVGLVGYCDDGDNLALIYEYMANGDLRENMSGKRGGNVLTWENRMQIAVEAAQGLEYLHNGCRPPMVHRDVKTTNILLNERCGAKLADFGLSRSFPIDGECHVSTVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTNQPVIDKTR----------ERPHIND 796          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.674e-45
Identity = 89/195 (45.64%), Postives = 123/195 (63.08%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWA 616
            G  +A+K       QG  E+  E+  L  L H +LV L+G+C E ++ +LVYE+M  G+L +HLF     PL W  R++  +G+A+GL +LH  +E+ +I+RD KT+NILLD ++ AK+SDFGL+K  P    THVST V G++GY  PEY     LT KSDVYSFGVVL E +  R  ++   P  + NL EWA
Sbjct:  542 GTLIAIKRATPHSQQGLAEFETEIVMLSRLRHRHLVSLIGFCDEHNEMILVYEYMANGTLRSHLFGSNLPPLSWKQRLEACIGSARGLHYLHTGSERGIIHRDVKTTNILLDENFVAKMSDFGLSKAGPSMDHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQINLAEWA 736          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.263e-44
Identity = 96/196 (48.98%), Postives = 132/196 (67.35%), Query Frame = 2
Query:   38 TVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSL--PLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGE-HNLVEWA 616
            TVAVK L+    QG++E++AE+  LG + HPNLV L+GYC   +++LLVYE+M  GSL++ L  +  +   L WS R+KIA+GAA+GLAFLH      +I+RD K SNILLD D+  K++DFGLA+      ++HVST + GT+GY  PEY  +   T+K DVYSFGV+LLE++TG+     +    E  NLV WA
Sbjct:  941 TVAVKKLSEAKTQGNREFMAEMETLGKVKHPNLVSLLGYCSFSEEKLLVYEYMVNGSLDHWLRNQTGMLEVLDWSKRLKIAVGAARGLAFLHHGFIPHIIHRDIKASNILLDGDFEPKVADFGLAR-LISACESHVSTVIAGTFGYIPPEYGQSARATTKGDVYSFGVILLELVTGKEPTGPDFKESEGGNLVGWA 1135          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 90/193 (46.63%), Postives = 131/193 (67.88%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLP-LPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWA 616
            VAVK       QG  E+  EV  L    H +LV L+GYC E+ + ++VYE+M +G+L++HL+     P L W  R++I +GAA+GL +LH  + + +I+RD K++NILLD ++ AK++DFGL+K  P+  +THVST V G++GY  PEY+    LT KSDVYSFGVV+LE++ GR  +D + P  + NL+EWA
Sbjct:  512 VAVKRGAPQSRQGLAEFKTEVEMLTQFRHRHLVSLIGYCDENSEMIIVYEYMEKGTLKDHLYDLDDKPRLSWRQRLEICVGAARGLHYLHTGSTRAIIHRDVKSANILLDDNFMAKVADFGLSKTGPDLDQTHVSTAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVMLEVVCGRPVIDPSLPREKVNLIEWA 704          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: BRI1_ARATH (Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 97/201 (48.26%), Postives = 133/201 (66.17%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF--RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVM-GTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPH 625
            G  VA+K L H   QG +E++AE+  +G + H NLV L+GYC   D+RLLVYEFM  GSLE+ L   +K  + L WS R KIA+G+A+GLAFLH      +I+RD K+SN+LLD +  A++SDFG+A+       TH+S   + GT GY  PEY  +   ++K DVYS+GVVLLE+LTG+R  D +   G++NLV W + H
Sbjct:  905 GSAVAIKKLIHVSGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGDERLLVYEFMKYGSLEDVLHDPKKAGVKLNWSTRRKIAIGSARGLAFLHHNCSPHIIHRDMKSSNVLLDENLEARVSDFGMAR-LMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTD-SPDFGDNNLVGWVKQH 1103          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.815e-44
Identity = 93/195 (47.69%), Postives = 123/195 (63.08%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWA 616
            G  VAVK  N    QG  E+  E+  L  L H +LV L+GYC E+ + +LVYEFM  G   +HL+ K   PL W  R++I +G+A+GL +LH    + +I+RD K++NILLD    AK++DFGL+KD    G+ HVST V G++GY  PEY     LT KSDVYSFGVVLLE L  R +++   P  + NL EWA
Sbjct:  548 GTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGKNLAPLTWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKSTNILLDEALVAKVADFGLSKDV-AFGQNHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEALCARPAINPQLPREQVNLAEWA 741          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.676e-44
Identity = 91/192 (47.40%), Postives = 129/192 (67.19%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF-RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEW 613
            VAVK L+H   QG+KE+ AEV  L  + H NLV LVGYC E +   L+YE+M  G L  H+  ++G   L W  R+KI + +A+GL +LH   + P+++RD KT+NILL+   +AKL+DFGL++  P +G+THVST V GT GY  PEY  T  L  KSDVYSFG+VLLE++T +  ++++R   + ++ EW
Sbjct:  617 VAVKMLSHSSSQGYKEFKAEVELLLRVHHKNLVGLVGYCDEGENLALIYEYMANGDLREHMSGKRGGSILNWETRLKIVVESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHLHAKLADFGLSRSFPIEGETHVSTVVAGTPGYLDPEYYRTNWLNEKSDVYSFGIVLLEIITNQLVINQSRE--KPHIAEW 806          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y5189_ARATH (Probable LRR receptor-like protein kinase At1g51890 OS=Arabidopsis thaliana GN=At1g51890 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.070e-43
Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLP-LPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEW 613
            VAVK L+H   QG+KE+ AEV  L  + H +LV LVGYC + D   L+YE+M +G L  ++  K S+  L W  RM+IA+ AA+GL +LH     P+++RD K +NILL+    AKL+DFGL++  P DG++HV T V GT GY  PEY  T  L+ KSDVYSFGVVLLE++T +  M+KNR     N  EW
Sbjct:  594 VAVKMLSHSSAQGYKEFKAEVELLLRVHHRHLVGLVGYCDDGDNLALIYEYMEKGDLRENMSGKHSVNVLSWETRMQIAVEAAQGLEYLHNGCRPPMVHRDVKPTNILLNERSQAKLADFGLSRSFPVDGESHVMTVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTNQPVMNKNRERPHIN--EW 783          
The following BLAST results are available for this feature:
BLAST of FC923108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PAM74_ARATH5.671e-4548.96Probable LRR receptor-like serine/threonine-protei... [more]
RLK7_ARATH7.407e-4548.96Receptor-like protein kinase At5g59670 OS=Arabidop... [more]
Y1518_ARATH9.674e-4549.01Probable LRR receptor-like serine/threonine-protei... [more]
Y1357_ARATH9.674e-4545.64Probable receptor-like protein kinase At1g30570 OS... [more]
EXS_ARATH1.263e-4448.98Leucine-rich repeat receptor protein kinase EXS OS... [more]
Y2393_ARATH1.650e-4446.63Probable receptor-like protein kinase At2g39360 OS... [more]
BRI1_ARATH1.650e-4448.26Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidops... [more]
Y4391_ARATH2.815e-4447.69Probable receptor-like protein kinase At4g39110 OS... [more]
RLK6_ARATH3.676e-4447.40Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
Y5189_ARATH1.070e-4349.48Probable LRR receptor-like protein kinase At1g5189... [more]

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Properties
Property NameValue
Genbank descriptionC31701B09EF StrClemenN Citrus clementina cDNA clone C31701B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923108 ID=FC923108; Name=FC923108; organism=Citrus clementina; type=EST; length=636bp
GAATGGAACTGCTCCAGTGAAACCCGGTACTGGGCTTACTGTTGCAGTTA
AAACCTTAAATCATGGTGGACTTCAGGGACATAAAGAGTGGCTGGCGGAA
GTTAATTTCCTTGGCAACCTCCTCCATCCCAATTTGGTTAAATTGGTTGG
ATACTGCATCGAAGATGATCAAAGGCTGCTGGTATATGAGTTTATGCCTC
GAGGGAGTTTGGAAAACCACCTCTTCAGAAAAGGGTCCTTGCCACTTCCA
TGGTCTATCAGAATGAAGATTGCACTTGGTGCTGCTAAGGGTCTTGCCTT
TCTTCATGAAGAAGCTGAAAAACCTGTGATATATCGTGATTTCAAAACAT
CAAATATTTTATTAGATGCGGATTACAATGCCAAACTCTCTGATTTTGGA
CTTGCCAAAGACGCCCCAGAGGATGGTAAAACACATGTATCTACTCGAGT
AATGGGAACGTATGGATATGCTGCTCCAGAGTATGTGATGACTGGACATT
TGACATCAAAGAGTGATGTCTATAGCTTTGGAGTAGTTTTACTTGAAATG
TTGACTGGACGAAGATCCATGGATAAAAACCGACCAAATGGGGAACACAA
CCTTGTGGAATGGGCAAGACCGCATCTTGNGGACAA
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