FC923108

Overview
NameFC923108
Unique NameFC923108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: MET_SHEEP (Hepatocyte growth factor receptor OS=Ovis aries GN=MET PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 58/175 (33.14%), Postives = 90/175 (51.43%), Query Frame = 2
Query:   44 AVKTLNHGGLQGH-KEWLAEVNFLGNLLHPNLVKLVGYCIEDD-QRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDA--PEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            AVK+LN     G   ++L E   + +  HPN++ L+G C+  +   L+V  +M  G L N +  +   P    + +   L  AKG+ +L   A K  ++RD    N +LD  +  K++DFGLA+D    E    H  T       + A E + T   T+KSDV+SFGV+L E++T
Sbjct: 1109 AVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMEYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 1279          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: MET_PIG (Hepatocyte growth factor receptor OS=Sus scrofa GN=MET PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 58/175 (33.14%), Postives = 90/175 (51.43%), Query Frame = 2
Query:   44 AVKTLNHGGLQGH-KEWLAEVNFLGNLLHPNLVKLVGYCIEDD-QRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDA--PEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            AVK+LN     G   ++L E   + +  HPN++ L+G C+  +   L+V  +M  G L N +  +   P    + +   L  AKG+ +L   A K  ++RD    N +LD  +  K++DFGLA+D    E    H  T       + A E + T   T+KSDV+SFGV+L E++T
Sbjct: 1108 AVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 1278          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: MET_MUNMU (Hepatocyte growth factor receptor OS=Muntiacus muntjak GN=MET PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 58/175 (33.14%), Postives = 90/175 (51.43%), Query Frame = 2
Query:   44 AVKTLNHGGLQGH-KEWLAEVNFLGNLLHPNLVKLVGYCIEDD-QRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDA--PEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            AVK+LN     G   ++L E   + +  HPN++ L+G C+  +   L+V  +M  G L N +  +   P    + +   L  AKG+ +L   A K  ++RD    N +LD  +  K++DFGLA+D    E    H  T       + A E + T   T+KSDV+SFGV+L E++T
Sbjct: 1109 AVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMEYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 1279          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: MET_LOXAF (Hepatocyte growth factor receptor OS=Loxodonta africana GN=MET PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 58/175 (33.14%), Postives = 90/175 (51.43%), Query Frame = 2
Query:   44 AVKTLNHGGLQGH-KEWLAEVNFLGNLLHPNLVKLVGYCIEDD-QRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDA--PEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            AVK+LN     G   ++L E   + +  HPN++ L+G C+  +   L+V  +M  G L N +  +   P    + +   L  AKG+ +L   A K  ++RD    N +LD  +  K++DFGLA+D    E    H  T       + A E + T   T+KSDV+SFGV+L E++T
Sbjct: 1109 AVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 1279          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: MET_BOVIN (Hepatocyte growth factor receptor OS=Bos taurus GN=MET PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 58/175 (33.14%), Postives = 90/175 (51.43%), Query Frame = 2
Query:   44 AVKTLNHGGLQGH-KEWLAEVNFLGNLLHPNLVKLVGYCIEDD-QRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDA--PEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            AVK+LN     G   ++L E   + +  HPN++ L+G C+  +   L+V  +M  G L N +  +   P    + +   L  AKG+ +L   A K  ++RD    N +LD  +  K++DFGLA+D    E    H  T       + A E + T   T+KSDV+SFGV+L E++T
Sbjct: 1109 AVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMEYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 1279          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: LIMK2_MOUSE (LIM domain kinase 2 OS=Mus musculus GN=Limk2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 55/193 (28.50%), Postives = 97/193 (50.26%), Query Frame = 2
Query:   29 TGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGK----THVSTR--------------VMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEML 553
            TG  + +K L     +  K +L EV  + +L HPN++K +G   +D +  L+ E++  G+L++  F +   P PW  +++ A G + G+A+LH      +I+RD  + N L+  D    ++DFGL++   E+ K       +T+              V+G   + APE +         DV+SFG+VL E++
Sbjct:  353 TGKVMVMKELIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKD--FLRSVDPFPWQQKVRFAKGISSGMAYLHSMC---IIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRPPVEKATTKKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDETVDVFSFGIVLCEII 540          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: GDT4_DICDI (Probable serine/threonine-protein kinase gdt4 OS=Dictyostelium discoideum GN=gdt4 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 57/180 (31.67%), Postives = 96/180 (53.33%), Query Frame = 2
Query:   38 TVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILL-----DADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGR 562
            +VAVK   H       E   E + L  + HPN+V  +G     +   +V ++ PRGSL N+  R  ++ L     ++I+L  ++  +FLH+     +I+RD K  N+L+     D+   AK+SDFG  ++   +GK  ++++  GT  Y +PE +     T  +DVYSF ++  E+L+GR
Sbjct: 1372 SVAVKLFKHH--YSKDEIDKETSILSKIKHPNIVSFIGSLNFLNTYGIVIDYHPRGSL-NYYTRNQNIKLSMVQNIRISLDISRACSFLHKNG---IIHRDLKPDNVLIVSFDPDSSICAKISDFGTCREI--NGKHELNSKA-GTTRYMSPEILEGLPYTYSTDVYSFAILFFELLSGR 1542          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: EPHB4_HUMAN (Ephrin type-B receptor 4 OS=Homo sapiens GN=EPHB4 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 54/177 (30.51%), Postives = 94/177 (53.11%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHK-EWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHL-FRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMG---TYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            VA+KTL  G  +  + E+L+E + +G   HPN+++L G        +++ EFM  G+L++ L    G   +   + M    G A G+ +L   AE   ++RD    NIL++++   K+SDFGL++   E+      T  +G      + APE +     TS SD +S+G+V+ E+++
Sbjct:  644 VAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGM--LRGIASGMRYL---AEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMS 815          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CSK_BOVIN (Tyrosine-protein kinase CSK OS=Bos taurus GN=CSK PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 58/177 (32.77%), Postives = 94/177 (53.11%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRL-LVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDA---PEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEM 550
            G  VAVK + +      + +LAE + +  L H NLV+L+G  +E+   L +V E+M +GSL ++L  +G   L     +K +L   + + +L        ++RD    N+L+  D  AK+SDFGL K+A    + GK  V         + APE +     ++KSDV+SFG++L E+
Sbjct:  216 GNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQLLGVIVEEKSGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVK--------WTAPEALREKKFSTKSDVWSFGILLWEI 379          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CDC15_YEAST (Cell division control protein 15 OS=Saccharomyces cerevisiae GN=CDC15 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.102e-15
Identity = 62/194 (31.96%), Postives = 95/194 (48.97%), Query Frame = 2
Query:   29 TGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVE 610
            T   VA+K + +   +   + +AE++ L NL H N+VK  G+  +  +  ++ E+   GSL   L  + S  L  +           GL +LH E    VI+RD K +NILL AD   KL+DFG++        T     + GT  + APE +     ++ SD++S G  ++EMLT      KN P   HNL +
Sbjct:   47 TDQVVAIKEVVYENDEELNDIMAEISLLKNLNHNNIVKYHGFIRKSYELYILLEYCANGSLRR-LISRSSTGLSENESKTYVTQTLLGLKYLHGEG---VIHRDIKAANILLSADNTVKLADFGVSTIVNSSALT-----LAGTLNWMAPEILGNRGASTLSDIWSLGATVVEMLT------KNPP--YHNLTD 223          
The following BLAST results are available for this feature:
BLAST of FC923108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MET_SHEEP2.102e-1533.14Hepatocyte growth factor receptor OS=Ovis aries GN... [more]
MET_PIG2.102e-1533.14Hepatocyte growth factor receptor OS=Sus scrofa GN... [more]
MET_MUNMU2.102e-1533.14Hepatocyte growth factor receptor OS=Muntiacus mun... [more]
MET_LOXAF2.102e-1533.14Hepatocyte growth factor receptor OS=Loxodonta afr... [more]
MET_BOVIN2.102e-1533.14Hepatocyte growth factor receptor OS=Bos taurus GN... [more]
LIMK2_MOUSE2.102e-1528.50LIM domain kinase 2 OS=Mus musculus GN=Limk2 PE=1 ... [more]
GDT4_DICDI2.102e-1531.67Probable serine/threonine-protein kinase gdt4 OS=D... [more]
EPHB4_HUMAN2.102e-1530.51Ephrin type-B receptor 4 OS=Homo sapiens GN=EPHB4 ... [more]
CSK_BOVIN2.102e-1532.77Tyrosine-protein kinase CSK OS=Bos taurus GN=CSK P... [more]
CDC15_YEAST2.102e-1531.96Cell division control protein 15 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC31701B09EF StrClemenN Citrus clementina cDNA clone C31701B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923108 ID=FC923108; Name=FC923108; organism=Citrus clementina; type=EST; length=636bp
GAATGGAACTGCTCCAGTGAAACCCGGTACTGGGCTTACTGTTGCAGTTA
AAACCTTAAATCATGGTGGACTTCAGGGACATAAAGAGTGGCTGGCGGAA
GTTAATTTCCTTGGCAACCTCCTCCATCCCAATTTGGTTAAATTGGTTGG
ATACTGCATCGAAGATGATCAAAGGCTGCTGGTATATGAGTTTATGCCTC
GAGGGAGTTTGGAAAACCACCTCTTCAGAAAAGGGTCCTTGCCACTTCCA
TGGTCTATCAGAATGAAGATTGCACTTGGTGCTGCTAAGGGTCTTGCCTT
TCTTCATGAAGAAGCTGAAAAACCTGTGATATATCGTGATTTCAAAACAT
CAAATATTTTATTAGATGCGGATTACAATGCCAAACTCTCTGATTTTGGA
CTTGCCAAAGACGCCCCAGAGGATGGTAAAACACATGTATCTACTCGAGT
AATGGGAACGTATGGATATGCTGCTCCAGAGTATGTGATGACTGGACATT
TGACATCAAAGAGTGATGTCTATAGCTTTGGAGTAGTTTTACTTGAAATG
TTGACTGGACGAAGATCCATGGATAAAAACCGACCAAATGGGGAACACAA
CCTTGTGGAATGGGCAAGACCGCATCTTGNGGACAA
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