FC923108

Overview
NameFC923108
Unique NameFC923108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 88/212 (41.51%), Postives = 124/212 (58.49%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGL-------------QGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHL 628
            G  +AVK +N                 Q  KE+  E   L  + H NL   VGYC +     L+YE+M  G+L+++L  + +  L W  R+ IA+ +A+GL +LH     P+++RD KT+NILL+ +  AK++DFGL+K  PED  +HV T VMGT GY  PEY  T  L  KSDVYSFG+VLLE++TG+RS+ K     + N+V +  P L
Sbjct:  589 GTEIAVKMINDSSFGKSKGSSSSSSSSQVSKEFQVEAELLLTVHHRNLASFVGYCDDGRSMALIYEYMANGNLQDYLSSENAEDLSWEKRLHIAIDSAQGLEYLHHGCRPPIVHRDVKTANILLNDNLEAKIADFGLSKVFPEDDLSHVVTAVMGTPGYVDPEYYNTFKLNEKSDVYSFGIVLLELITGKRSIMKTDDGEKMNVVHYVEPFL 800          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: RPK2_ARATH (LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.107e-40
Identity = 90/197 (45.69%), Postives = 130/197 (65.99%), Query Frame = 2
Query:   35 LTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDK---NRPNGEHNLVEWA 616
            + VA+K L+ G  QG +++ AE+  LG L HPNLV L+GY   + +  LVY ++P G+LE  +  + +    W +  KIAL  A+ LA+LH++    V++RD K SNILLD D NA LSDFGLA+      +TH +T V GT+GY APEY MT  ++ K+DVYS+GVVLLE+L+ ++++D    +  NG  N+V+WA
Sbjct:  897 VVVAIKRLSIGRFQGVQQFHAEIKTLGRLRHPNLVTLIGYHASETEMFLVYNYLPGGNLEKFIQERSTRD--WRVLHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDCNAYLSDFGLAR-LLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFVSYGNG-FNIVQWA 1089          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CRK5_ARATH (Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 87/189 (46.03%), Postives = 125/189 (66.14%), Query Frame = 2
Query:    5 GTAPVKPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF-RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRS 568
            GT P     G+ VAVK L+    QG KE+  EV  +  L H NLVKL+G+C+E ++++LVYEF+   SL+  LF  +    L W+ R KI  G A+G+ +LH+++   +I+RD K  NILLDAD N K++DFG+A+    D     + RV+GTYGY +PEY M G  + KSDVYSFGV++LE+++GR++
Sbjct:  357 GTLP----NGVQVAVKRLSKTSGQGEKEFKNEVVVVAKLQHRNLVKLLGFCLEREEKILVYEFVSNKSLDYFLFDSRMQSQLDWTTRYKIIGGIARGILYLHQDSRLTIIHRDLKAGNILLDADMNPKVADFGMARIFEIDQTEAHTRRVVGTYGYMSPEYAMYGQFSMKSDVYSFGVLVLEIISGRKN 541          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.466e-40
Identity = 88/194 (45.36%), Postives = 126/194 (64.95%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF---RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEW 613
            +AVK +    +QG +E++AE+  LG L H NLV L G+C + +  LL+Y+++P GSL++ L+   R+  + L W+ R KIA G A GL +LHEE EK VI+RD K SN+L++ D N +L DFGLA+   E G    +T V+GT GY APE    G  +S SDV++FGV+LLE+++GRR  D    +G   L +W
Sbjct:  388 IAVKKITPNSMQGVREFIAEIESLGRLRHKNLVNLQGWCKQKNDLLLIYDYIPNGSLDSLLYSRPRQSGVVLSWNARFKIAKGIASGLLYLHEEWEKVVIHRDIKPSNVLIEDDMNPRLGDFGLAR-LYERGSQSNTTVVVGTIGYMAPELARNGKSSSASDVFAFGVLLLEIVSGRRPTD----SGTFFLADW 576          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.466e-40
Identity = 89/208 (42.79%), Postives = 130/208 (62.50%), Query Frame = 2
Query:    5 GTAPVKPGT---GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGS-LPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWA 616
            G   V  GT   G  VAVK L+    QG  E+  EV  +  L H NLV+L+G+ ++ ++R+LVYE+MP  SL+  LF     + L W  R  I  G A+G+ +LH+++   +I+RD K SNILLDAD N K++DFG+A+    D     ++R++GTYGY APEY M G  + KSDVYSFGV++LE+++GR++      +G  +L+  A
Sbjct:  361 GFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLFDPTKQIQLDWMQRYNIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADINPKIADFGMARIFGLDQTQDNTSRIVGTYGYMAPEYAMHGQFSMKSDVYSFGVLVLEIISGRKNSSFGESDGAQDLLTHA 568          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CRK24_ARATH (Cysteine-rich receptor-like protein kinase 24 OS=Arabidopsis thaliana GN=CRK24 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.466e-40
Identity = 90/207 (43.48%), Postives = 130/207 (62.80%), Query Frame = 2
Query:    5 GTAPVKPGTGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF---RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGE-HNLVEW 613
            GT P     G  VAVK L+    QG +E+  EV  +  L H NLVKL+GY ++ D+++LVYEF+P  SL++ LF   +KG L   W+ R  I  G  +G+ +LH+++   +I+RD K  NILLDAD N K+ DFG+A++   D     + RV+GT GY  PEYV  G  ++KSDVYSFGV++LE++ G+++   N  +G   NLV +
Sbjct:  329 GTFP----NGTEVAVKRLSKTSGQGEEEFKNEVFLVAKLQHRNLVKLLGYAVKGDEKILVYEFLPNKSLDHFLFDPVKKGQLD--WTRRYNIINGITRGIVYLHQDSRLTIIHRDLKAGNILLDADMNPKIVDFGVARNFRVDQTEATTARVVGTIGYMPPEYVTNGQFSTKSDVYSFGVLILEIIGGKKNSSINETDGSISNLVTY 529          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CRK15_ARATH (Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana GN=CRK15 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.466e-40
Identity = 91/208 (43.75%), Postives = 130/208 (62.50%), Query Frame = 2
Query:    5 GTAPVKPGT---GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSL-PLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWA 616
            G   V  GT   G  VAVK L+    QG  E+  EV  +  L H NLV+L+G+ I   +R+LVYE+MP  SL+  LF       L W+ R K+  G A+G+ +LH+++   +I+RD K SNILLDAD N KL+DFGLA+    D     ++R++GT+GY APEY + G  + KSDVYSFGV++LE+++G+++      +G H+LV  A
Sbjct:  347 GFGEVYKGTFSNGTEVAVKRLSKSSGQGDTEFKNEVVVVAKLQHRNLVRLLGFSIGGGERILVYEYMPNKSLDYFLFDPAKQNQLDWTRRYKVIGGIARGILYLHQDSRLTIIHRDLKASNILLDADMNPKLADFGLARIFGMDQTQENTSRIVGTFGYMAPEYAIHGQFSVKSDVYSFGVLVLEIISGKKNNSFYETDGAHDLVTHA 554          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CRK29_ARATH (Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.206e-40
Identity = 87/200 (43.50%), Postives = 129/200 (64.50%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF--RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAK--DAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMD--KNRPNGEHNLVEW 613
            G  +AVK L+    QG  E+  E+  L  L H NLV+L+G+CI+ ++RLLVYEF+   SL+  +F   K  L L W +R K+  G A+GL +LHE++   +I+RD K SNILLD + N K++DFGLAK  D+ +      ++R+ GTYGY APEY M G  + K+DV+SFGV+++E++TG+R+ +   N      +L+ W
Sbjct:  379 GQEIAVKRLSGNSGQGDNEFKNEILLLAKLQHRNLVRLIGFCIQGEERLLVYEFIKNASLDQFIFDTEKRQL-LDWVVRYKMIGGIARGLLYLHEDSRFRIIHRDLKASNILLDQEMNPKIADFGLAKLFDSGQTMTHRFTSRIAGTYGYMAPEYAMHGQFSVKTDVFSFGVLVIEIITGKRNNNGGSNGDEDAEDLLSW 577          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CRK8_ARATH (Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40
Identity = 88/205 (42.93%), Postives = 129/205 (62.93%), Query Frame = 2
Query:    5 GTAPVKPGT---GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGS-LPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLV 607
            G   V  GT   G  VAVK L+    QG  E+  EV  +  L H NLV+L+G+ ++ ++R+LVYE+MP  SL+  LF       L W  R  I  G A+G+ +LH+++   +I+RD K SNILLDAD N K++DFG+A+    D     ++R++GTYGY APEY M G  + KSDVYSFGV++LE+++GR++   +  +G  +L+
Sbjct:  363 GFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLFDPTKQTQLDWMQRYNIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADINPKIADFGMARIFGLDQTQDNTSRIVGTYGYMAPEYAMHGQFSMKSDVYSFGVLVLEIISGRKNSSFDESDGAQDLL 567          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CRK28_ARATH (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40
Identity = 86/200 (43.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF--RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAK--DAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMD--KNRPNGEHNLVEW 613
            G  +AVK L+    QG  E+  E+  L  L H NLV+L+G+CIE  +R+LVYEF+   SL+N +F  +K  L L W +R K+  G A+GL +LHE++   +I+RD K SNILLD + N K++DFGLAK  D  +      ++++ GTYGY APEY + G  + K+DV+SFGV+++E++TG+ + +   N      NL+ W
Sbjct:  383 GQEIAVKRLSCTSGQGDSEFKNEILLLAKLQHRNLVRLLGFCIEGQERILVYEFIKNASLDNFIFDLKKRQL-LDWGVRYKMIGGVARGLLYLHEDSRYRIIHRDLKASNILLDQEMNPKIADFGLAKLYDTDQTSTHRFTSKIAGTYGYMAPEYAIYGQFSVKTDVFSFGVLVIEIITGKGNNNGRSNDDEEAENLLSW 581          
The following BLAST results are available for this feature:
BLAST of FC923108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y4291_ARATH1.107e-4041.51Probable LRR receptor-like serine/threonine-protei... [more]
RPK2_ARATH1.107e-4045.69LRR receptor-like serine/threonine-protein kinase ... [more]
CRK5_ARATH1.888e-4046.03Cysteine-rich receptor-like protein kinase 5 OS=Ar... [more]
LRKA2_ARATH2.466e-4045.36Lectin-domain containing receptor kinase A4.2 OS=A... [more]
CRK6_ARATH2.466e-4042.79Cysteine-rich receptor-like protein kinase 6 OS=Ar... [more]
CRK24_ARATH2.466e-4043.48Cysteine-rich receptor-like protein kinase 24 OS=A... [more]
CRK15_ARATH2.466e-4043.75Cysteine-rich receptor-like protein kinase 15 OS=A... [more]
CRK29_ARATH4.206e-4043.50Cysteine-rich receptor-like protein kinase 29 OS=A... [more]
CRK8_ARATH5.493e-4042.93Cysteine-rich receptor-like protein kinase 8 OS=Ar... [more]
CRK28_ARATH5.493e-4043.00Cysteine-rich receptor-like protein kinase 28 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31701B09EF StrClemenN Citrus clementina cDNA clone C31701B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923108 ID=FC923108; Name=FC923108; organism=Citrus clementina; type=EST; length=636bp
GAATGGAACTGCTCCAGTGAAACCCGGTACTGGGCTTACTGTTGCAGTTA
AAACCTTAAATCATGGTGGACTTCAGGGACATAAAGAGTGGCTGGCGGAA
GTTAATTTCCTTGGCAACCTCCTCCATCCCAATTTGGTTAAATTGGTTGG
ATACTGCATCGAAGATGATCAAAGGCTGCTGGTATATGAGTTTATGCCTC
GAGGGAGTTTGGAAAACCACCTCTTCAGAAAAGGGTCCTTGCCACTTCCA
TGGTCTATCAGAATGAAGATTGCACTTGGTGCTGCTAAGGGTCTTGCCTT
TCTTCATGAAGAAGCTGAAAAACCTGTGATATATCGTGATTTCAAAACAT
CAAATATTTTATTAGATGCGGATTACAATGCCAAACTCTCTGATTTTGGA
CTTGCCAAAGACGCCCCAGAGGATGGTAAAACACATGTATCTACTCGAGT
AATGGGAACGTATGGATATGCTGCTCCAGAGTATGTGATGACTGGACATT
TGACATCAAAGAGTGATGTCTATAGCTTTGGAGTAGTTTTACTTGAAATG
TTGACTGGACGAAGATCCATGGATAAAAACCGACCAAATGGGGAACACAA
CCTTGTGGAATGGGCAAGACCGCATCTTGNGGACAA
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