FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig599 contig Ccv1_Contig599:22..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 7.056e-70
Identity = 134/199 (67.34%), Postives = 161/199 (80.90%), Query Frame = 3
Query:   66 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE---GDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            MFLTR+EYDRGV+TFSPEGRLFQVEY++EAIKLGSTAIG+ TKEGVVL VEKR TSPLLE  S+EKI+EID HIGCAMSGL ADAR+++EHAR     H   Y E + VES TQ++CDLALRFGE   G+E  MSRPFGV+LLIAG D ++G  L++ +PSGTF++ NAKAIGSGSEGA + L  ++   LTL+EAE +
Sbjct:    1 MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELL 199          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.053e-69
Identity = 136/200 (68.00%), Postives = 164/200 (82.00%), Query Frame = 3
Query:   66 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE-GDEE---SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            MFLTR+EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIG+ T EGVVLAVEKRITSPL+ PS+VEKI+E+D+HIGCA SGL+ADARTL+E ARVE QNH F Y E M++ES  QA+  LA++FG+ GD +   +MSRPFGV++L AG +   P L++ DPSGTF +  AKAIGSGSEGA  +LQ+ ++ DLTL EA  I+
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEAGQPQLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDIS 200          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.738e-68
Identity = 123/197 (62.44%), Postives = 163/197 (82.74%), Query Frame = 3
Query:   66 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE--GDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            MF ++TEYDRGVNTFSPEGR+FQ+EYAIEAIKLGST++G++T + V++A EKR+ S L++PSSV KI+EID HIG  +SG++ADAR LV+HARVE QNHRF+Y EPM+VES   A CDL+++FGE  G ++ MSRPFGVSLLIAG DENGP L+ TDPSGT+ + +A+AIG G+E A +   E+Y +++T++EAE +
Sbjct:    1 MFSSKTEYDRGVNTFSPEGRIFQIEYAIEAIKLGSTSLGIQTPDAVIIAAEKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVDENGPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENL 197          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 8.626e-68
Identity = 130/198 (65.66%), Postives = 159/198 (80.30%), Query Frame = 3
Query:   66 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEES--MSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            MF+T+ E D GVNTFS EGRLFQVEYA EA+KLGST IG++TKEGVVLAVEKRI+SPL+  SS+EKI+EID+HIG A+SGL ADARTL+++AR+E QNHRF Y EP+ VE   QA+ DL+LRFGEG  +   MSRPFGV+LLIAG DE GP L+ TDPSG F +  AKA G+G+E A S L E+Y + +TL+EAE +A
Sbjct:    1 MFMTKNENDHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLMLGSSIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVDETGPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKYNKSMTLREAEILA 198          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.397e-63
Identity = 118/197 (59.90%), Postives = 155/197 (78.68%), Query Frame = 3
Query:   66 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD-EESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            MFLTR+EYDRGVNTFSPEGRLFQVEYAIEA+KLGST+IG+KT EGV+LA EKR TS L+   ++EKI ++D+HIG   +GLIAD+RTLVE A++E QN  F+Y   + VE  TQ++ +LAL+FG+ D + SMSRPFGV++L AG D+ G  L++ DPSGTF  C AK+IG+ S+GA+ +L+EQY   LT++E   +A
Sbjct:    1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQEGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMA 197          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.280e-52
Identity = 101/192 (52.60%), Postives = 137/192 (71.35%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            +T YDR +  FSP+GRLFQVEYA EA+K G+TA+G+K +EGVVL V+KR+TS L+EP S+EK+ +ID HIG A +GL+ADAR LVE AR+E Q +R++YGEP+ V+   +A+CDL   +    +    RPFG +LLIAG D  G  L+ TDPSG   +  A AIG G + A    +E+Y++D+TLQEA  +A
Sbjct:    7 QTAYDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVY---TQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELA 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.451e-48
Identity = 101/189 (53.44%), Postives = 129/189 (68.25%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR +  FSP+GRLFQV YA EA+K G+TA+G+K  EGVVLAVEKRITS L+EP S EKI +ID+HI  A SG+IADAR LV  AR+E Q HR +YGEP  +    + +CDL        +    RPFG +LL+AG +E  P LY TDPSG ++   A AIGSG   A +  +E+YK D++L+EA  +A
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMH---TQYGGVRPFGAALLMAGVNEK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLA 194          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.592e-48
Identity = 97/189 (51.32%), Postives = 134/189 (70.90%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR +  FSP+GRLFQV+YA EA+K G+TA+G+K K+GVVLAVEKR+TS L+EP S EKI +ID+HI  A SG+IADAR LV+ AR+E Q +R +YGEP+ +    + +CDL        +    RPFG +LL+AG +E  P L+ TDPSG +++  A AIGSG   A +  +E+Y+ ++TL+EA  +A
Sbjct:   10 YDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMH---TQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLA 194          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.691e-47
Identity = 99/189 (52.38%), Postives = 129/189 (68.25%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR +  FSP+GRLFQV YA EA+K G+TA+G+K K+GVVLAVEKRITS L+EP S EKI +ID+HI  A SG+IADAR LV  AR+E Q HR +YGEP  +    + +CDL        +    RPFG +LL+AG ++  P LY TDPSG ++   A AIGSG   A +  +++Y+ D+TL EA  +A
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMH---TQYGGVRPFGAALLMAGVNDK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLA 194          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.691e-47
Identity = 94/189 (49.74%), Postives = 133/189 (70.37%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR +  FSPEGRL+QVEYA EA++ G+TA+G+K K+GVVLAV++RITS L++ SS+EKI +ID+HI  A SGL+ADAR L++ AR+E Q +R SYGE +TVE+  + +CD+   +    +   +RPFG++LLI G D +   L+ TDPSG   +  A AIGSG   A   L+ +Y +D+T+ E   +A
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELA 195          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSA5_YEAST7.056e-7067.34Proteasome component PUP2 OS=Saccharomyces cerevis... [more]
PSA5_DROME2.053e-6968.00Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSA5_TRYBB1.738e-6862.44Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSA5_ENTHI8.626e-6865.66Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA5_CAEEL6.397e-6359.90Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSMA_METKA2.280e-5252.60Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_PYRHO4.451e-4853.44Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_THESM7.592e-4851.32Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_PYRAB1.691e-4752.38Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_METM51.691e-4749.74Proteasome subunit alpha OS=Methanococcus maripalu... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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