FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.371e-33
Identity = 74/195 (37.95%), Postives = 123/195 (63.08%), Query Frame = 3
Query:   72 LTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            ++   YDR +  FSP+G LFQVEYA+EA++ G+ A+G++ K+ +VL VEK+ T+ L +  S+ KI+++D+HI    +GL AD+R L+  A +E Q++R +  +  +VE  ++ +  +  R+    +    RPFG+S LI G D +G P+LY TDPSG++    A AIG  S+     L++ Y  D++ +E+  +A
Sbjct:    1 MSSARYDRAITVFSPDGHLFQVEYAMEAVRKGTVAVGVRGKDVIVLGVEKKATAKLQDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRY---TQSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEKNY-TDVSEEESIKLA 191          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.044e-33
Identity = 81/190 (42.63%), Postives = 112/190 (58.95%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR-VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            Y   + TFSP G+L Q+EYA+ A+  G TA+G+K   G+VLA EK+ +SPL +PSS+ KI  I  +IG   SG+  D R LV+ AR V    ++  Y E        Q   D+A    E  +    RP+GVSLLIAG DE GP LY  DPSG+++   A AIG  +  A + L+++Y + L L++A  IA
Sbjct:    5 YSFSLTTFSPSGKLVQIEYALNAVNQGVTALGIKATNGIVLATEKKSSSPLADPSSLSKISLITPNIGMVYSGMGPDYRVLVDRARKVSHTGYKRIYNEYPPTRILVQ---DVARVMQEATQSGGVRPYGVSLLIAGWDEGGPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLELEDAVHIA 191          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.282e-33
Identity = 74/187 (39.57%), Postives = 114/187 (60.96%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ +SV+KI  +  +IG   SG+  D R LV  +R + Q +   Y E + V   TQ + + A    E  +    RPFGVSLLIAG D+NGP LY  DPSG+++   A A+G     A + L+++Y +D+ L +A
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPV---TQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.282e-33
Identity = 74/187 (39.57%), Postives = 114/187 (60.96%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ +SV+KI  +  +IG   SG+  D R LV  +R + Q +   Y E + V   TQ + + A    E  +    RPFGVSLLIAG D+NGP LY  DPSG+++   A A+G     A + L+++Y +D+ L +A
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPV---TQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.898e-33
Identity = 72/187 (38.50%), Postives = 114/187 (60.96%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ +SV+KI  +  +IG   SG+  D R LV  +R + + +   Y EP+ V   TQ + + A    E  +    RPFGVSLL+AG D+ GP LY  DPSG+++   A A+G     A + L+++Y +D+ L +A
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPV---TQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.898e-33
Identity = 72/187 (38.50%), Postives = 114/187 (60.96%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ +SV+KI  +  +IG   SG+  D R LV  +R + + +   Y EP+ V   TQ + + A    E  +    RPFGVSLL+AG D+ GP LY  DPSG+++   A A+G     A + L+++Y +D+ L +A
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPV---TQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.177e-32
Identity = 75/182 (41.21%), Postives = 111/182 (60.99%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLT 629
            YDR +  FSP+G LFQVEYA EA++ G  A+G+K K+ ++ AVEK+    L +  +  KI ++DEHI  A +GL ADAR +V HA++E Q  R SY + + V+   + +  +  R     + S SRP+GVS +I G +ENG P L+ T+PSGT    NA AIG   +     +++ Y+  +T
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVRKGLCAVGVKGKDSIIFAVEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRYVARVQQR---STQSSGSRPYGVSTIIGGFNENGQPQLWKTEPSGTSSAWNAAAIGRNDKVVLEFMEKNYQDGMT 181          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA71_DROME (Proteasome subunit alpha type-7-1 OS=Drosophila melanogaster GN=Pros28.1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.177e-32
Identity = 73/187 (39.04%), Postives = 113/187 (60.43%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS-LYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            + YDR V  FSP+G L QVEYA EA++ GSTA+G++    VVL VEK+  + L E   V KI  +D H+  A +GL ADAR ++  A+VE Q+HR +  +P+T+E  T+ +  L  ++ + +     RPFG+S LI G D +G + L+ T+PSG F++  A A G  ++      ++ Y+++    E
Sbjct:    3 SRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGR---RPFGISCLIGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANE 186          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 77/179 (43.02%), Postives = 113/179 (63.13%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQY 614
            YDR ++ FSP+G +FQVEYA+EA+K G+ A+G+K K  VVL  E+R T  L +   +  K+ +ID H+  + SGL AD+R L+E ARVE Q+HR +  +P+TVE  T+ +  +  R+    +    RPFGVS LIAG D  ++ P LY T+PSG +   +A+ IG  S+     L++ Y
Sbjct:    4 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRY---TQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNY 179          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 79/194 (40.72%), Postives = 111/194 (57.22%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE----SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ---EQYKQDLTLQEA 641
            T YD   + FSP+GR FQVEYA++A++ G+T+IG+K  +GVV AVEK ITS LL P    KI  +D HIGC  SGLI D R LV   R E  + +  Y  P+ + +        A R G+  +     +  RPFGVS +  G D+NG  LY  +PSG++W     A G G + A + L+   + + + L+ +EA
Sbjct:    6 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPA-------FADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREA 192          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSA7_DICDI2.371e-3337.95Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSA2_NEUCR4.044e-3342.63Probable proteasome subunit alpha type-2 OS=Neuros... [more]
PSA2_ORYSJ5.282e-3339.57Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI5.282e-3339.57Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2B_ARATH6.898e-3338.50Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2A_ARATH6.898e-3338.50Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA7_TRYBB1.177e-3241.21Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA71_DROME1.177e-3239.04Proteasome subunit alpha type-7-1 OS=Drosophila me... [more]
PSA7_YEAST2.007e-3243.02Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA3_YEAST2.007e-3240.72Proteasome component C1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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