FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.007e-32
Identity = 76/187 (40.64%), Postives = 117/187 (62.57%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            ++Y   + TFSP G+L Q+E+A++A   G +AIG+K K GVVL  EK++ S L++ +SV+KI  I E+IG   +G+  D+R L++ AR E++ +   Y E + V    Q + +LA    E  +    RPFGVSLL+AG DE GP LY  DPSG+++   A AIG     + + L+++Y  DL +++A
Sbjct:    3 SDYSFSLTTFSPSGKLVQIEHALQAAASGGSAIGIKAKNGVVLITEKKLHS-LVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPV---LQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEKGPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEIEDA 185          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 76/191 (39.79%), Postives = 116/191 (60.73%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YD     FSPEGRL+QVEYA+E+I    TAIG+   +G+VLA E+++TS LLE  +S EK+ ++++ I  A++GL ADA  L+  AR+  QN+  +Y E + VE   + L D+   +    +    RPFGVS + AG D+  G  LY ++PSG +    A ++G+ +  A + LQ  YK D+ + +A  +A
Sbjct:    6 YDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY---TQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELA 193          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.471e-32
Identity = 79/191 (41.36%), Postives = 114/191 (59.69%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YD     FSPEGRL+QVEYA+EAI    T +G+ + EG+V+A E++    LL+ S   EK+  + ++I C ++G+ ADA  L+ H R    ++R SYGE M VE   Q LC+   R+    +    RPFGVSLL  G D++ G  LY +DPSG +    A  IGS  + A + L+++YK    L+EA+ +A
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRY---TQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSP-NLEEAKQLA 191          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.471e-32
Identity = 78/187 (41.71%), Postives = 110/187 (58.82%), Query Frame = 3
Query:   84 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR-VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            +Y   + TFSP G+L Q+EYA+ A+  G T++G+K  +GVVLA EK+ TS L   +S+EK+  I   IG   SG+  D R LV+ +R V    ++  Y E    +   Q   ++A    E  +    RPFGVSLL+AG DE GPSLY  DPSGT++   A AIG  S  A + L+++Y  +L L +A
Sbjct:    4 KYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQ---EIASVMQESTQSGGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDDA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32
Identity = 76/180 (42.22%), Postives = 104/180 (57.78%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYK 617
            R +YD  V T+SP GRLFQVEYA+EA+K GS  +GL+++   VLA   +  S L   S   K+  + +H G A++GL AD R L    R E  NH F Y  P+ V      L D A       + S  RP+GV LL+AG DE+G  LYY  PSG +++  A AIGS S+ A + L+ +++
Sbjct:    3 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL--SSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKA---QVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFE 177          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.840e-32
Identity = 76/191 (39.79%), Postives = 112/191 (58.64%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            R +YD  V  +SP+GRL QVEYA+EA+KLG+  +GLK K+  VL    + TS L +     KI+ ID+H+G +++GL ADAR L  + R E  N++ SY    T    ++ + +L  +     +    RP+GV LL+AG DE GP +Y   PS TF+ C A +IGS S+ A + L++   + L   + E I
Sbjct:    3 RNQYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALCKPTSELSDTQ--RKIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYD---TTYPVSRLITNLGNKMQTTTQRYDRRPYGVGLLVAGYDERGPHIYQVTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEII 188          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.699e-31
Identity = 75/182 (41.21%), Postives = 114/182 (62.64%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQD 623
            + YDR V  FSP+GRL QVEYA EA++ GSTA+G++    VVL VEK+  + L E  +V KI  +D H+  A +GL  DAR L+  A+VE Q+HR +  +P+T+E  T+ +  L  ++ + +     RPFG+S LI G D +G P L+ T+PSG F++  A A G  ++      ++QY+++
Sbjct:    3 SRYDRAVTIFSPDGRLLQVEYAQEAVRKGSTAVGVRGGNCVVLGVEKKSVAKLQEDRTVRKICVLD-HVVMAFAGL-TDARILINRAQVECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGR---RPFGISCLIGGFDADGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREE 179          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 8.432e-31
Identity = 76/185 (41.08%), Postives = 107/185 (57.84%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            Y   + TFSP G+L Q+EYA+ A+  G+ ++G+K   GVVLA EK+  S L +  SV KI  I +HIG   SG+  D R LV  AR   Q +   Y EP+    T Q +  +A    E  +    RPFGVSLLIAG DE+ P L+ +DPSG ++   A A+G       + L+++Y +DL L++A
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKASNGVVLATEKKQKSILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPI---PTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEDRPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.438e-30
Identity = 77/196 (39.29%), Postives = 114/196 (58.16%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYK--QDLTLQEAET 647
            R +YD  + TFSP GR+ Q+EYA+EA+K G  A+ LK+K+  VL   KR +S L   S  +KI  +D+H+G A+SGL ADAR L  + R E  N+ + Y   M VE     + D       R+G        RP+GV LL+AG D+ G  +Y T PSG F+   + +IGS S+ A + L++ ++  ++ TL++  T
Sbjct:    3 RNQYDSDITTFSPSGRIHQIEYAMEAVKQGGAAVALKSKQFAVLVSLKRSSSEL--GSYQKKIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGR-------RPYGVGLLVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLIT 189          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.879e-30
Identity = 68/188 (36.17%), Postives = 114/188 (60.64%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCD---LALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            YD  V+T+SP+G+LFQV+YA +A++   T + +K K+GVVL VEK + S +L   S  ++  ID H+G A++G +ADAR L+  AR E +N++ +YG+P+ ++  +Q +     +   +G        RPFG S+ I G D+ GP L+  +PSG+       ++G G + A + L++    ++T +EA
Sbjct:    8 YDLYVSTYSPDGKLFQVDYANKAVENSGTLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGS------VRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIKFSEMTCREA 189          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSA2_DICDI2.007e-3240.64Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA4_YEAST2.621e-3239.79Proteasome component Y13 OS=Saccharomyces cerevisi... [more]
PSA4_CAEEL4.471e-3241.36Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA2_SCHPO4.471e-3241.71Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA1_ORYSJ5.840e-3242.22Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA1_DROME5.840e-3239.79Proteasome subunit alpha type-1 OS=Drosophila mela... [more]
PSA71_DROVI1.699e-3141.21Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]
PSA2_CARAU8.432e-3141.08Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSA1_DICDI1.438e-3039.29Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA3_DICDI1.879e-3036.17Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
back to top