FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.453e-30
Identity = 71/192 (36.98%), Postives = 106/192 (55.21%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            T YD  V TFSP+GR+FQ+EYA +A+    TA+G+K K+G+VL VEK I S ++ P S  +I  +  H G A++GL AD R +V  A+ E  N+   YGE + V+           LC L             RPFG  +++ G D +GP LY  +PSG  ++    AIG G + A + +++    ++T +E
Sbjct:    6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTCRE 188          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.453e-30
Identity = 74/185 (40.00%), Postives = 105/185 (56.76%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            Y   + TFSP G+L Q+EYA+ A+  G+ ++G+K   GVVLA EK+  S L +  S  K+  I +HIG   SG+  D R LV  AR   Q +   Y EP+    T Q +  +A    E  +    RPFGVSLLIAG DE  P L+ +DPSG ++   A A+G       + L+++Y +DL L++A
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPI---PTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.466e-30
Identity = 75/191 (39.27%), Postives = 119/191 (62.30%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL-LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            +DR +  FSPEGRL+QVEYA +AI   + T + LK+ +  V+A +K++T   + P +V  +  I + IGCAM+G IAD+R+ V+ AR E  N R+ YG  M V+   + + D+   + +  E    RP G S+ LIA  +E GPS+Y TDP+G F    A ++G+ +  A+S L+++YK +L+ ++A  +A
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAE---MRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLA 196          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.466e-30
Identity = 72/185 (38.92%), Postives = 104/185 (56.22%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            Y   + TFSP G+L Q+EYA+ A+  G+ ++G+    GVV+A E +  SPL E  SV ++  I  HIG   SG+  D R LV+ AR   Q +  +Y EP+ V    Q +  L     E  +    RPFGVSLLI G D + P LY +DPSG ++   A A+G  +    + L+++Y +DL L +A
Sbjct:    6 YSFSLTTFSPSGKLVQLEYALAAVSGGAPSVGIIASNGVVIATENKHKSPLYEQHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATL---MQEYTQSGGVRPFGVSLLICGWDNDRPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.138e-30
Identity = 74/187 (39.57%), Postives = 107/187 (57.22%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            T YD G+  FSP+GRLFQ EYA +A++  ST IG+K ++GV+LA+EK +TS LL+P    +I  +D HIG A +G I D + +V+ AR E  + R +YG P+        L +    F      S  RPFGV   +A  D  GP LY  +P+G +W  N  A G G + A + L++     L +++A
Sbjct:    6 TGYDLGL-FFSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLF---TCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDA 188          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.323e-30
Identity = 73/190 (38.42%), Postives = 112/190 (58.95%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            YDR +  FSPEGRLFQVEYA +A+K  G T+IG++ K+ V +  +K++   LL+ +SV  +  I +++G   +G+ ADARTLV+ AR E    RF YG  M V+  ++ + D +  +    + +  RP GV  +I G D E GP L+  DP+G F+   A + GS  + A + L+++ K D      ET+
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVY---TQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETV 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.323e-30
Identity = 70/192 (36.46%), Postives = 107/192 (55.73%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            T YD  V TFSP+GR+FQVEYA +A+    T +G+K K+G+VL VEK +TS ++   S  +I  +  H G A++GL AD R +V  A+ E  ++   YGEP++V+           LC L             RPFG  +++ G D +GP LY  +PSG  ++    A+G G + A + +++    +LT +E
Sbjct:    6 TGYDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLKLSELTCRE 188          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.323e-30
Identity = 77/191 (40.31%), Postives = 114/191 (59.69%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR-VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            Y   + TFSP G+L Q++YA+ A+K G T++G+K   GVV+A EK+ +SPL    ++ K+  +   IG   SG+  D R LV+ +R V   +++  YGE      T   + ++A    E  +    RPFGVSLLIAG DE NG SLY  DPSG+++   A AIG GS  A + L++++  +L L++A  IA
Sbjct:    5 YSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGE---YPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIA 192          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.218e-29
Identity = 76/177 (42.94%), Postives = 107/177 (60.45%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQE 608
            + +D  VN +S +G L QVEYA EA++ GST +GL+TKE VVL VEKR    L    +  KI +ID+H+    +GL ADAR LV  A+VE Q+HR ++  P +VE  T+ L  L   +    +    RPFGVS LI G DE+G P L+ TDPSG +++ +A   G   +  +  L++
Sbjct:    2 SRFDESVNIYS-DGHLLQVEYAQEAVRKGST-VGLRTKECVVLGVEKRAIDSLQIERTSRKIKKIDQHMAMTFAGLTADARVLVSRAQVEAQSHRLNFDRPASVEYITRYLARLKQTY---TQSVARRPFGVSCLIGGFDEDGRPRLFQTDPSGIYYEWSANTTGRLGQTVNEYLEK 173          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.590e-29
Identity = 77/192 (40.10%), Postives = 111/192 (57.81%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLL-EPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ-DLTLQEAETIA 653
            YD     FSPEGRL+QVEYA+EAI    T +G+   +GV+LA E+R    LL E    EKI +++E + C+++G+ +DA  L    R+  Q +   Y EP+  E    ALCD+   +    +    RPFGVSLL  G D++ G  LY +DPSG +    A  IG+ S  A S L++ YK+ ++TL+ A  +A
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALA 193          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSA3_SPIOL2.453e-3036.98Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA2_XENLA2.453e-3040.00Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA6_DROME5.466e-3039.27Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA2_DROME5.466e-3038.92Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSA3_SCHPO7.138e-3039.57Probable proteasome subunit alpha type-3 OS=Schizo... [more]
PSA6_TOBAC9.323e-3038.42Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA3_ORYSJ9.323e-3036.46Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA2_YEAST9.323e-3040.31Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSA73_DROVI1.218e-2942.94Proteasome subunit alpha type-7-1B OS=Drosophila v... [more]
PSA4_RAT1.590e-2940.10Proteasome subunit alpha type-4 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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