FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.590e-29
Identity = 77/192 (40.10%), Postives = 111/192 (57.81%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLL-EPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ-DLTLQEAETIA 653
            YD     FSPEGRL+QVEYA+EAI    T +G+   +GV+LA E+R    LL E    EKI +++E + C+++G+ +DA  L    R+  Q +   Y EP+  E    ALCD+   +    +    RPFGVSLL  G D++ G  LY +DPSG +    A  IG+ S  A S L++ YK+ ++TL+ A  +A
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALA 193          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.590e-29
Identity = 77/192 (40.10%), Postives = 111/192 (57.81%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLL-EPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ-DLTLQEAETIA 653
            YD     FSPEGRL+QVEYA+EAI    T +G+   +GV+LA E+R    LL E    EKI +++E + C+++G+ +DA  L    R+  Q +   Y EP+  E    ALCD+   +    +    RPFGVSLL  G D++ G  LY +DPSG +    A  IG+ S  A S L++ YK+ ++TL+ A  +A
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALA 193          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.590e-29
Identity = 77/192 (40.10%), Postives = 111/192 (57.81%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLL-EPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ-DLTLQEAETIA 653
            YD     FSPEGRL+QVEYA+EAI    T +G+   +GV+LA E+R    LL E    EKI +++E + C+++G+ +DA  L    R+  Q +   Y EP+  E    ALCD+   +    +    RPFGVSLL  G D++ G  LY +DPSG +    A  IG+ S  A S L++ YK+ ++TL+ A  +A
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALA 193          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.590e-29
Identity = 72/181 (39.78%), Postives = 108/181 (59.67%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSV-EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYK 617
            + +YD    T+SP GRLFQVEYA EA+  GS A+G K K+ VVL   KR  SP+ + SS  EK+ ++D+H+G A++GL+AD R L    R E  N+R+ +     +    + + +   ++    + +  RPFGV LLIAG D  GP LY+T PSG  +   A A+G  S+ A + L++ ++
Sbjct:    3 KNQYDTNTTTWSPTGRLFQVEYANEAVNNGSAAVGAKNKDFVVLTALKR--SPVAQFSSYQEKVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGE---KYQRHIQFAGKRPFGVGLLIAGYDSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFE 178          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA72_DROME (Proteasome subunit alpha type-7-1A OS=Drosophila melanogaster GN=Pros28.1A PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 71/191 (37.17%), Postives = 108/191 (56.54%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS-LYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            + Y R +  FSP+G L QVEYA EA++ GSTA+G++    VVL VEK   S + E  +V KI  +D H+  A +GL ADAR L+   +VE Q+HR ++   +T+E  T+ L  L  ++ + +     RPFG+S LI G D +G + L++T+PSG F +  A A G  +       ++ Y       + + I
Sbjct:    3 SRYGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEMQEDRTVRKISMLDRHVALAFAGLTADARILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGR---RPFGISCLIGGIDADGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAI 190          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 67/192 (34.90%), Postives = 108/192 (56.25%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            T YD  V TFSP+GR+FQ+EYA +A+    T +G+K K+G+V+ VEK I S ++ P S  +I  +  H G A++GL AD R +V  A+ E +++   YG+ + V+  ++       LC L             RPFG  +++ G D +GP LY  +PSG  ++    AIG G + A + +++    ++T +E
Sbjct:    6 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNLSEMTCKE 188          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 73/190 (38.42%), Postives = 107/190 (56.32%), Query Frame = 3
Query:   72 LTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            + +  Y   + TFSP G+L Q+EYA+ A+  G+ ++G+K   GVVLA EK+  S L +  SV K+  I +HIG   SG+  D R LV  AR   Q +   Y EP+    T Q +  +A    E  +    RPFGVSLLI G +E  P L+ +DPSG ++   A A+G       + L+++Y +DL L++A
Sbjct:    1 MAKRGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI---PTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 72/190 (37.89%), Postives = 114/190 (60.00%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            YDR +  FSPEGRLFQVEYA +A+K  G T+IG++ K+ V +  +K++   LL+ SSV  +  I ++IG   +G+ ADAR+LV+ AR +    RF+YG  M V+   + + D +  +    + +  RP GV  ++ G D ENGP LY  DP+G F+   A + G   + A + L+++ K++ +    ET+
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVY---TQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETV 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 73/185 (39.46%), Postives = 105/185 (56.76%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            Y   + TFSP G+L Q+EYA+ A+  G+ ++G+K   GVVLA EK+  S L +  SV K+  I +HIG   SG+  D R LV  AR   Q +   Y EP+    T Q +  +A    E  +    RPFGVSLLI G +E  P L+ +DPSG ++   A A+G       + L+++Y +DL L++A
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI---PTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 73/185 (39.46%), Postives = 105/185 (56.76%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            Y   + TFSP G+L Q+EYA+ A+  G+ ++G+K   GVVLA EK+  S L +  SV K+  I +HIG   SG+  D R LV  AR   Q +   Y EP+    T Q +  +A    E  +    RPFGVSLLI G +E  P L+ +DPSG ++   A A+G       + L+++Y +DL L++A
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI---PTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDA 187          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSA4_MOUSE1.590e-2940.10Proteasome subunit alpha type-4 OS=Mus musculus GN... [more]
PSA4_HUMAN1.590e-2940.10Proteasome subunit alpha type-4 OS=Homo sapiens GN... [more]
PSA4_BOVIN1.590e-2940.10Proteasome subunit alpha type-4 OS=Bos taurus GN=P... [more]
PSA1_TRYCR1.590e-2939.78Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA72_DROME2.077e-2937.17Proteasome subunit alpha type-7-1A OS=Drosophila m... [more]
PSA3_ARATH2.077e-2934.90Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]
PSA2_MOUSE2.077e-2938.42Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA6A_ARATH2.713e-2937.89Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA2_RAT2.713e-2939.46Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_HUMAN2.713e-2939.46Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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