FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 73/185 (39.46%), Postives = 105/185 (56.76%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            Y   + TFSP G+L Q+EYA+ A+  G+ ++G+K   GVVLA EK+  S L +  SV K+  I +HIG   SG+  D R LV  AR   Q +   Y EP+    T Q +  +A    E  +    RPFGVSLLI G +E  P L+ +DPSG ++   A A+G       + L+++Y +DL L++A
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI---PTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 76/192 (39.58%), Postives = 111/192 (57.81%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLL-EPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ-DLTLQEAETIA 653
            YD     FSPEGRL+QVEYA+EAI    T +G+   +GV+LA E+R    LL E    EKI +++E + C+++G+ +DA  L    R+  Q +   Y EP+  E    ALCD+   +    +    RPFGVSLL  G D++ G  LY +DP+G +    A  IG+ S  A S L++ YK+ ++TL+ A  +A
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALA 193          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.627e-29
Identity = 71/190 (37.37%), Postives = 113/190 (59.47%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGT---FWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            T YD   +TFSP+GR+FQVEYA++A++  STAIG++ K+GVV  VEK + S L E  S +++  +D H+G A++GL+ADAR+L + AR E  N R ++G  + ++        +A+        S  RPFG S ++   S  +G  LY  DPSG    +W C   AIG   + A + +++   +++T ++
Sbjct:    6 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADR---VAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGC---AIGKARQAAKTEIEKLQMKEMTCRD 189          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 71/190 (37.37%), Postives = 113/190 (59.47%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGT---FWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            T YD   +TFSP+GR+FQVEYA++A++  STAIG++ K+GVV  VEK + S L E  S +++  +D H+G A++GL+ADAR+L + AR E  N R ++G  + ++        +A+        S  RPFG S ++   S  +G  LY  DPSG    +W C   AIG   + A + +++   +++T ++
Sbjct:    6 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADR---VAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC---AIGKARQAAKTEIEKLQMKEMTCRD 189          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 71/190 (37.37%), Postives = 113/190 (59.47%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGT---FWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            T YD   +TFSP+GR+FQVEYA++A++  STAIG++ K+GVV  VEK + S L E  S +++  +D H+G A++GL+ADAR+L + AR E  N R ++G  + ++        +A+        S  RPFG S ++   S  +G  LY  DPSG    +W C   AIG   + A + +++   +++T ++
Sbjct:    6 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADR---VAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC---AIGKARQAAKTEIEKLQMKEMTCRD 189          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 71/190 (37.37%), Postives = 113/190 (59.47%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGT---FWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            T YD   +TFSP+GR+FQVEYA++A++  STAIG++ K+GVV  VEK + S L E  S +++  +D H+G A++GL+ADAR+L + AR E  N R ++G  + ++        +A+        S  RPFG S ++   S  +G  LY  DPSG    +W C   AIG   + A + +++   +++T ++
Sbjct:    6 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADR---VAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC---AIGKARQAAKTEIEKLQMKEMTCRD 189          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.296e-28
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ 620
            R +YD  V  +SP+GR+ Q+EYA+EA+K GS  +GLK+K   VL   KR  S L   +  +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+    +
Sbjct:    3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 178          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.296e-28
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ 620
            R +YD  V  +SP+GR+ Q+EYA+EA+K GS  +GLK+K   VL   KR  S L   +  +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+    +
Sbjct:    3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 178          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.296e-28
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ 620
            R +YD  V  +SP+GR+ Q+EYA+EA+K GS  +GLK+K   VL   KR  S L   +  +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+    +
Sbjct:    3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 178          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.296e-28
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ 620
            R +YD  V  +SP+GR+ Q+EYA+EA+K GS  +GLK+K   VL   KR  S L   +  +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+    +
Sbjct:    3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 178          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSA2_BOVIN2.713e-2939.46Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSA4_MACFA3.543e-2939.58Proteasome subunit alpha type-4 OS=Macaca fascicul... [more]
PSA3_MOUSE4.627e-2937.37Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA3_RAT6.043e-2937.37Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_HUMAN6.043e-2937.37Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_BOVIN6.043e-2937.37Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA1_PONAB2.296e-2837.84Proteasome subunit alpha type-1 OS=Pongo abelii GN... [more]
PSA1_MOUSE2.296e-2837.84Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_HUMAN2.296e-2837.84Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_BOVIN2.296e-2837.84Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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