FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.999e-28
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ 620
            R +YD  V  +SP+GR+ Q+EYA+EA+K GS  +GLK+K   VL   KR  S L   +  +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+    +
Sbjct:    3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 178          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.999e-28
Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ 620
            R +YD  V  +SP+GR+ Q+EYA+EA+K GS  +GLK+K   VL   KR  S L   +  +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+    +
Sbjct:    3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHRKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 178          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_DROME (Proteasome subunit alpha type-4 OS=Drosophila melanogaster GN=Pros29 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.917e-28
Identity = 74/195 (37.95%), Postives = 111/195 (56.92%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ----DLTLQEAETIA 653
            YD     FSPEGRL+QVEYA+EAI    T +G+  ++G++LA E R T+ LL+ +   EKI  +++++ C+++G+ +DA  L    R+  Q ++FSYGE +  E     LCD+   +    +    RPFGVSLL  G D   G  LY +DPSG +    A  IG+    A S L+++        LTL +A+ +A
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECRSTNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAY---TQYGGKRPFGVSLLYMGWDNKYGYQLYQSDPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLA 196          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.681e-28
Identity = 69/190 (36.32%), Postives = 111/190 (58.42%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            Y+R +  FSPEGRLFQVEYA +A+K  G T+IG++ K+ + +   K++   LL+ +SV  +  I +++G   +G+ ADARTLV+ AR E    RF+YG  M V+   + + D +  +    + +  RP GV  ++ G  DE GP LY  DP+G ++   A + G   + A + L+++ K D +    ET+
Sbjct:    9 YNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVY---TQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETV 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.726e-28
Identity = 73/186 (39.25%), Postives = 105/186 (56.45%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN--GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            Y   + TFSP G+L Q+EYA+ A+K G  ++GL+ K+GVVLA E  + S L +     K+ +I +HIGC  SG+  D R LV+ AR     +   YGE M    T Q + D+A    E  +    RPFG SLLIAG D+N   P L+  DPSG ++   A A+G     A + L++++ + L L +
Sbjct:    5 YGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATE-NVGSVLTDDQ--PKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEM---PTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDD 184          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.140e-27
Identity = 68/190 (35.79%), Postives = 110/190 (57.89%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            YDR +  FSPEGRLFQVEYA +A+K  G T+IG++ K+ V +  +K++   LL+ SSV  +  + +++G   +G+ AD+R+LV+ AR E    RF YG  M  +   + + D +  +    + +  RP GV  ++ G D E GP LY  DP+G F+   A + G   + A + L+++ K++      ET+
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVY---TQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETV 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.539e-27
Identity = 74/182 (40.66%), Postives = 104/182 (57.14%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSV-EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL-ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYK 617
            + +YD    T+SP GRLFQVEYA EA+  GS A+G+K  + VVL   KR  +P+   SS  EK  ++DEH+G A+SGL+AD R L    R E  N+R+ +      ++    L D+   +     + +  RPFGV LLIAG D  GP LY T PSG  +   A A+G  S+ A + L+  ++
Sbjct:    3 KNQYDTDTTTWSPTGRLFQVEYANEAVNNGSAAVGVKGADYVVLTALKR--NPVSGLSSYQEKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDS----DAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHFR 178          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27
Identity = 64/190 (33.68%), Postives = 110/190 (57.89%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            +DR +  FSPEGRL+QVEYA +AI  G  T++ ++ K+  V+  +K++   LL+ S+V  + +I E+IGC M+G+ AD+R+ V+ AR E  N ++ YG  + V+   + + D++  + +  E    RP G  +++ G D E GP +Y  DP+G +    A A G     + S L+++ K+       +T+
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTV 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27
Identity = 64/190 (33.68%), Postives = 110/190 (57.89%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            +DR +  FSPEGRL+QVEYA +AI  G  T++ ++ K+  V+  +K++   LL+ S+V  + +I E+IGC M+G+ AD+R+ V+ AR E  N ++ YG  + V+   + + D++  + +  E    RP G  +++ G D E GP +Y  DP+G +    A A G     + S L+++ K+       +T+
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTV 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27
Identity = 64/190 (33.68%), Postives = 110/190 (57.89%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            +DR +  FSPEGRL+QVEYA +AI  G  T++ ++ K+  V+  +K++   LL+ S+V  + +I E+IGC M+G+ AD+R+ V+ AR E  N ++ YG  + V+   + + D++  + +  E    RP G  +++ G D E GP +Y  DP+G +    A A G     + S L+++ K+       +T+
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTV 195          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSA1_RAT2.999e-2837.84Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA1_MACFA2.999e-2837.84Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA4_DROME3.917e-2837.95Proteasome subunit alpha type-4 OS=Drosophila mela... [more]
PSA6_SOYBN6.681e-2836.32Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA2_CAEEL8.726e-2839.25Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA6B_ARATH1.140e-2735.79Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA1_TRYBR2.539e-2740.66Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA6_RAT9.648e-2733.68Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_HUMAN9.648e-2733.68Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN9.648e-2733.68Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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