FC923112
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 2.999e-28 Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 3 Query: 78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ 620 R +YD V +SP+GR+ Q+EYA+EA+K GS +GLK+K VL KR S L + +KI+ +D HIG +++GL ADAR L R E + RF + P+ V + R+G RP+GV LLIAG D+ GP ++ T PS ++ C A +IG+ S+ A + L+ + Sbjct: 3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 178
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 2.999e-28 Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 3 Query: 78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ 620 R +YD V +SP+GR+ Q+EYA+EA+K GS +GLK+K VL KR S L + +KI+ +D HIG +++GL ADAR L R E + RF + P+ V + R+G RP+GV LLIAG D+ GP ++ T PS ++ C A +IG+ S+ A + L+ + Sbjct: 3 RNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHRKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSE 178
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_DROME (Proteasome subunit alpha type-4 OS=Drosophila melanogaster GN=Pros29 PE=1 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 3.917e-28 Identity = 74/195 (37.95%), Postives = 111/195 (56.92%), Query Frame = 3 Query: 87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ----DLTLQEAETIA 653 YD FSPEGRL+QVEYA+EAI T +G+ ++G++LA E R T+ LL+ + EKI +++++ C+++G+ +DA L R+ Q ++FSYGE + E LCD+ + + RPFGVSLL G D G LY +DPSG + A IG+ A S L+++ LTL +A+ +A Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECRSTNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAY---TQYGGKRPFGVSLLYMGWDNKYGYQLYQSDPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLA 196
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 6.681e-28 Identity = 69/190 (36.32%), Postives = 111/190 (58.42%), Query Frame = 3 Query: 87 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650 Y+R + FSPEGRLFQVEYA +A+K G T+IG++ K+ + + K++ LL+ +SV + I +++G +G+ ADARTLV+ AR E RF+YG M V+ + + D + + + + RP GV ++ G DE GP LY DP+G ++ A + G + A + L+++ K D + ET+ Sbjct: 9 YNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVY---TQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETV 195
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 8.726e-28 Identity = 73/186 (39.25%), Postives = 105/186 (56.45%), Query Frame = 3 Query: 87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN--GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638 Y + TFSP G+L Q+EYA+ A+K G ++GL+ K+GVVLA E + S L + K+ +I +HIGC SG+ D R LV+ AR + YGE M T Q + D+A E + RPFG SLLIAG D+N P L+ DPSG ++ A A+G A + L++++ + L L + Sbjct: 5 YGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATE-NVGSVLTDDQ--PKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEM---PTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDD 184
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.140e-27 Identity = 68/190 (35.79%), Postives = 110/190 (57.89%), Query Frame = 3 Query: 87 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650 YDR + FSPEGRLFQVEYA +A+K G T+IG++ K+ V + +K++ LL+ SSV + + +++G +G+ AD+R+LV+ AR E RF YG M + + + D + + + + RP GV ++ G D E GP LY DP+G F+ A + G + A + L+++ K++ ET+ Sbjct: 9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVY---TQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETV 195
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.539e-27 Identity = 74/182 (40.66%), Postives = 104/182 (57.14%), Query Frame = 3 Query: 78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSV-EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL-ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYK 617 + +YD T+SP GRLFQVEYA EA+ GS A+G+K + VVL KR +P+ SS EK ++DEH+G A+SGL+AD R L R E N+R+ + ++ L D+ + + + RPFGV LLIAG D GP LY T PSG + A A+G S+ A + L+ ++ Sbjct: 3 KNQYDTDTTTWSPTGRLFQVEYANEAVNNGSAAVGVKGADYVVLTALKR--NPVSGLSSYQEKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDS----DAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHFR 178
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27 Identity = 64/190 (33.68%), Postives = 110/190 (57.89%), Query Frame = 3 Query: 87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650 +DR + FSPEGRL+QVEYA +AI G T++ ++ K+ V+ +K++ LL+ S+V + +I E+IGC M+G+ AD+R+ V+ AR E N ++ YG + V+ + + D++ + + E RP G +++ G D E GP +Y DP+G + A A G + S L+++ K+ +T+ Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTV 195
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27 Identity = 64/190 (33.68%), Postives = 110/190 (57.89%), Query Frame = 3 Query: 87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650 +DR + FSPEGRL+QVEYA +AI G T++ ++ K+ V+ +K++ LL+ S+V + +I E+IGC M+G+ AD+R+ V+ AR E N ++ YG + V+ + + D++ + + E RP G +++ G D E GP +Y DP+G + A A G + S L+++ K+ +T+ Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTV 195
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27 Identity = 64/190 (33.68%), Postives = 110/190 (57.89%), Query Frame = 3 Query: 87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650 +DR + FSPEGRL+QVEYA +AI G T++ ++ K+ V+ +K++ LL+ S+V + +I E+IGC M+G+ AD+R+ V+ AR E N ++ YG + V+ + + D++ + + E RP G +++ G D E GP +Y DP+G + A A G + S L+++ K+ +T+ Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTV 195 The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 197
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bpback to top |