FC923112
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.646e-26 Identity = 64/190 (33.68%), Postives = 109/190 (57.37%), Query Frame = 3 Query: 87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650 +DR + FSPEGRL+QVEYA +AI G T++ ++ K+ V+ +K++ LL+ S+V + +I E IGC M+G+ AD+R+ V+ AR E N ++ YG + V+ + + D++ + + E RP G +++ G D E GP +Y DP+G + A A G + S L+++ K+ +T+ Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTV 195
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.254e-26 Identity = 70/194 (36.08%), Postives = 108/194 (55.67%), Query Frame = 3 Query: 75 TRTEYDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650 T YDR + FSPEGRL+QVEYA +A+K G T+IG++ K+ V + +K++ LL+ +SV + I ++IG +GL ADAR+LV AR E RF +G M V+ + + D A + + + RP GV ++ G D E L+ DP+G F+ A + G + A + L+++ K D ET+ Sbjct: 5 TGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVY---TQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETV 195
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.254e-26 Identity = 70/176 (39.77%), Postives = 95/176 (53.98%), Query Frame = 3 Query: 78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 605 R YD TFSP GRLFQVEYA+EAIK GS +GL++ VL KR L S +KI++ DEH+G +++GL DAR L + R + + + VE LCD A + + RP+GV LLI G D++G L PSG + AIG+ S+GA + L+ Sbjct: 3 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL--SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQK---NTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLE 173
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 6.254e-26 Identity = 70/186 (37.63%), Postives = 102/186 (54.84%), Query Frame = 3 Query: 99 VNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ--DLTLQE 638 V +SP+GR+ Q+EYA+EA+K GS +GLK+K VL KR S L + +KI+ +D HIG +++GL ADAR L R E + RF + P+ V + R+G RP+GV LLIAG D+ GP ++ T PS ++ C A +IG+ S+ A + L+ + D L E Sbjct: 9 VTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNE 185
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.067e-25 Identity = 65/192 (33.85%), Postives = 115/192 (59.90%), Query Frame = 3 Query: 87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVE--TQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650 YD + FSP+G+L+Q+EYA +AIK G T++G++ K+ VV+A +K+I L++P SV + ++ ++IGC +G++ D+++ A E T +H+F Y P V + + D+A + + +RP GV++++ G DE GP L+ DP+G F A A G + + + L++++K + L + ETI Sbjct: 9 YDMSI-IFSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVTSLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNV--LAKRMADIAQL---STQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETI 194
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.393e-25 Identity = 68/187 (36.36%), Postives = 109/187 (58.29%), Query Frame = 3 Query: 81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638 T YD + FSP+GR+FQ++YA +A++ T IG++ K+ VVLAVEK ITS L EP + +I I+++IG A++GL+AD + + AR E N+R + + + ++ + + S RPFG+S+++A DE GP LY +PSG+ + A A G + A + + E+ K D+ E Sbjct: 6 TGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAY---TLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEM-EKLKMDMRTDE 188
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.914e-25 Identity = 61/176 (34.66%), Postives = 102/176 (57.95%), Query Frame = 3 Query: 78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 605 R +YD V +SP+GRL QVEYA+EA+K GS +G+K++ V+ KR + L S +K+ EID H G +++GL++D R L + + E + R+ Y + + ++ ++ + L+ + RPFGV +LIAG D++G + TDPS + +IG+ S+ A + L+ Sbjct: 3 RNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDL--SSHQKKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAES---MQLKLQANTQYYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLE 173
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4L_DROME (Proteasome subunit alpha type-4-like OS=Drosophila melanogaster GN=Prosalpha3T PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24 Identity = 66/176 (37.50%), Postives = 92/176 (52.27%), Query Frame = 3 Query: 87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ 611 +D FSPEGRL+QVEYA+EA T +GL K GV+LA E+ + + V +I ++E+I C +G AD LV R+ Q ++F++GE + E LCD+ + + RPFGVS L G D G LY +DPSG + A IG S A LQ++ Sbjct: 5 FDSRTTIFSPEGRLYQVEYAMEAASQSGTCVGLLAKNGVLLATERSVDKLMDTSIPVPRISWLNENIACCATGNTADGNVLVNQLRMIAQQYQFNFGEMIPCEQLVTNLCDIKQAY---TQYGGKRPFGVSFLYMGWDCRFGFQLYQSDPSGNYSGWKATCIGRKSGAAMEMLQKE 177
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.703e-23 Identity = 62/181 (34.25%), Postives = 101/181 (55.80%), Query Frame = 3 Query: 87 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL-LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQD 623 +DR + FSPEGRL+QVEYA +A G T++G+ K + +K++ L++ S+V+ + I + IGC M+G IADAR V AR E + G PM + + + ++A + + RP GV++ L+A DE GPSL+ DP+G + A + G + L++++K+D Sbjct: 7 FDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIA---QVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKD 184
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.703e-23 Identity = 65/176 (36.93%), Postives = 98/176 (55.68%), Query Frame = 3 Query: 78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 605 R +YD T+SP+GRL QVEYA+EAIK GS +GL +K VL KR L S +K++ ID+HIG A++GL DAR L + + E + + + P+ V + + +A + +E RP+GV L+ G DE+GP L PSG + ++GS S+ A + ++ Sbjct: 3 RNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL--SSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVR---RLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIE 173 The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 197
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bpback to top |