FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.646e-26
Identity = 64/190 (33.68%), Postives = 109/190 (57.37%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            +DR +  FSPEGRL+QVEYA +AI  G  T++ ++ K+  V+  +K++   LL+ S+V  + +I E IGC M+G+ AD+R+ V+ AR E  N ++ YG  + V+   + + D++  + +  E    RP G  +++ G D E GP +Y  DP+G +    A A G     + S L+++ K+       +T+
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTV 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.254e-26
Identity = 70/194 (36.08%), Postives = 108/194 (55.67%), Query Frame = 3
Query:   75 TRTEYDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            T   YDR +  FSPEGRL+QVEYA +A+K  G T+IG++ K+ V +  +K++   LL+ +SV  +  I ++IG   +GL ADAR+LV  AR E    RF +G  M V+   + + D A  +    + +  RP GV  ++ G D E    L+  DP+G F+   A + G   + A + L+++ K D      ET+
Sbjct:    5 TGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVY---TQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETV 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.254e-26
Identity = 70/176 (39.77%), Postives = 95/176 (53.98%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 605
            R  YD    TFSP GRLFQVEYA+EAIK GS  +GL++    VL   KR    L   S  +KI++ DEH+G +++GL  DAR L  + R +       +   + VE     LCD A +     +    RP+GV LLI G D++G  L    PSG   +    AIG+ S+GA + L+
Sbjct:    3 RNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL--SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQK---NTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLE 173          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.254e-26
Identity = 70/186 (37.63%), Postives = 102/186 (54.84%), Query Frame = 3
Query:   99 VNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ--DLTLQE 638
            V  +SP+GR+ Q+EYA+EA+K GS  +GLK+K   VL   KR  S L   +  +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+    +  D  L E
Sbjct:    9 VTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL--AAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNE 185          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.067e-25
Identity = 65/192 (33.85%), Postives = 115/192 (59.90%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVE--TQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            YD  +  FSP+G+L+Q+EYA +AIK G  T++G++ K+ VV+A +K+I   L++P SV  + ++ ++IGC  +G++ D+++    A  E  T +H+F Y  P  V    + + D+A       + + +RP GV++++ G  DE GP L+  DP+G F    A A G   + + + L++++K +  L + ETI
Sbjct:    9 YDMSI-IFSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVTSLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNV--LAKRMADIAQL---STQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETI 194          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.393e-25
Identity = 68/187 (36.36%), Postives = 109/187 (58.29%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            T YD   + FSP+GR+FQ++YA +A++   T IG++ K+ VVLAVEK ITS L EP +  +I  I+++IG A++GL+AD   + + AR E  N+R  + + + ++     +      +      S  RPFG+S+++A  DE  GP LY  +PSG+ +   A A G   + A + + E+ K D+   E
Sbjct:    6 TGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAY---TLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEM-EKLKMDMRTDE 188          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.914e-25
Identity = 61/176 (34.66%), Postives = 102/176 (57.95%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 605
            R +YD  V  +SP+GRL QVEYA+EA+K GS  +G+K++   V+   KR  + L   S  +K+ EID H G +++GL++D R L  + + E  + R+ Y + + ++   ++   + L+     +    RPFGV +LIAG D++G  +  TDPS      +  +IG+ S+ A + L+
Sbjct:    3 RNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDL--SSHQKKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAES---MQLKLQANTQYYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLE 173          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4L_DROME (Proteasome subunit alpha type-4-like OS=Drosophila melanogaster GN=Prosalpha3T PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 66/176 (37.50%), Postives = 92/176 (52.27%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQ 611
            +D     FSPEGRL+QVEYA+EA     T +GL  K GV+LA E+ +   +     V +I  ++E+I C  +G  AD   LV   R+  Q ++F++GE +  E     LCD+   +    +    RPFGVS L  G D   G  LY +DPSG +    A  IG  S  A   LQ++
Sbjct:    5 FDSRTTIFSPEGRLYQVEYAMEAASQSGTCVGLLAKNGVLLATERSVDKLMDTSIPVPRISWLNENIACCATGNTADGNVLVNQLRMIAQQYQFNFGEMIPCEQLVTNLCDIKQAY---TQYGGKRPFGVSFLYMGWDCRFGFQLYQSDPSGNYSGWKATCIGRKSGAAMEMLQKE 177          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.703e-23
Identity = 62/181 (34.25%), Postives = 101/181 (55.80%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL-LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQD 623
            +DR +  FSPEGRL+QVEYA +A    G T++G+  K    +  +K++   L++ S+V+ +  I + IGC M+G IADAR  V  AR E     +  G PM  +   + + ++A       + +  RP GV++ L+A  DE GPSL+  DP+G +    A + G       + L++++K+D
Sbjct:    7 FDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIA---QVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKD 184          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.703e-23
Identity = 65/176 (36.93%), Postives = 98/176 (55.68%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 605
            R +YD    T+SP+GRL QVEYA+EAIK GS  +GL +K   VL   KR    L   S  +K++ ID+HIG A++GL  DAR L  + + E  + +  +  P+ V    + +  +A +     +E   RP+GV  L+ G DE+GP L    PSG   +    ++GS S+ A + ++
Sbjct:    3 RNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL--SSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVR---RLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIE 173          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSA6_MOUSE1.646e-2633.68Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA6_ORYSJ6.254e-2636.08Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA1_YEAST6.254e-2639.77Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA1_CHICK6.254e-2637.63Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA6_DICDI1.067e-2533.85Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSA3_DROME1.393e-2536.36Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA1_CAEEL6.914e-2534.66Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA4L_DROME4.482e-2437.50Proteasome subunit alpha type-4-like OS=Drosophila... [more]
PSA6_SCHPO1.703e-2334.25Probable proteasome subunit alpha type-6 OS=Schizo... [more]
PSA1_SCHPO1.703e-2336.93Probable proteasome subunit alpha type-1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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