FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.478e-22
Identity = 61/190 (32.11%), Postives = 102/190 (53.68%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLL-IAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            +DR +  FSPEGR++QVEYA +AI   + TA+ +K  +  V+AV+KR+   L+   +V  + +I + +GC   G+I DA+  ++ A+ E  + ++  G  M  E   + + DL   + +  E    R  G +LL I+  DE GP +Y  DP+G +      ++G     A S L+++ K+   L   E I
Sbjct:    9 FDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAE---MRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAI 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.551e-21
Identity = 59/180 (32.78%), Postives = 96/180 (53.33%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAI-KLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ 620
            YDR +  FSPEGRL+QVEYA +A  +    ++ ++ K+  V+  +K++   LL+P++V  I  I   IG  ++G I DAR     A+ E    R+ YG  M  +   + + +L+  +    + +  RP GV L     DE  GPS+Y TDP+G +    A A G   +   ++L+  +K+
Sbjct:   12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIY---TQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKK 188          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_CAEEL (Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.669e-19
Identity = 53/187 (28.34%), Postives = 101/187 (54.01%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGV-SLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            T YD   +TFSP+GR+FQVEYA +A+    T I ++ K GVV+  +K I+S L   ++  ++  +++++G A++G   D   L  +A  E       Y EPM +++   ++ +       G    +SRPFG  +  ++ + + G  L+  +PSG  ++  A A+G   + A + +++   ++L + +
Sbjct:    6 TGYDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTLG----ISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDVNQ 188          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.263e-18
Identity = 53/164 (32.32%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            G+T +G+  K+GVV A E+R +   L+   + +KI +IDEHI   ++G +ADA++L+++ + E   +R    E +++E+      ++          S   PF V  L+ G DENG  +Y  DPSG        + GSGS  A   L+++Y  +L + EA  +A
Sbjct:    9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANIL-------HSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVA 165          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.930e-17
Identity = 52/165 (31.52%), Postives = 89/165 (53.94%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDP-SGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            G+T +G+   +G+VLA E+R T    +   + +K+ +ID+ +G   +G + DA+ LV    VE+Q ++    E MT++  T  + +   R       +   P  V LLI G D+NGP +Y  D   G+  +    A GSGS  A   L++QY++++T++E   +A
Sbjct:    9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSR-------NRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLA 166          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_ENCCU (Probable proteasome subunit alpha type-4 OS=Encephalitozoon cuniculi GN=PRE9 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 61/176 (34.66%), Postives = 87/176 (49.43%), Query Frame = 3
Query:  102 NTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVL-AVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCD-LALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQD 623
            NTF+ EGRL QVE+AI+ +    T IG    +GVVL  V K  T+       +EKI ++ + I C + GL  DA  L  +AR++ Q     +G    VE     LC  +  R     + + +RPFGVS L AG  +   +L  TDPSGT  +      G   E  +  L+  + +D
Sbjct:    9 NTFTDEGRLPQVEFAIKNVSRAGTIIGYVCSDGVVLMGVNKEPTN-----GPMEKIYQLSDSIYCVLCGLFGDAMELKRYARIKAQEVLERFG----VECPLTTLCKFVGQRKQAFTQYAGTRPFGVSFLYAGVIDGKYALMSTDPSGTSNRWKGMCYGENEEAINRGLKNDFPED 175          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16
Identity = 54/205 (26.34%), Postives = 103/205 (50.24%), Query Frame = 3
Query:   72 LTRTEYDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG------PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYK----QDLTLQEAETIA 653
            ++R  +D+ +  FSPEG L+QVEYA +A+   G   + ++ K+ V++  +  +   L+ P ++  +  ++++ G  ++G   D + LV+ AR E   +++ YG PM V    +   D+A       +++  R  G  +   G ++N       P +Y  DP+G     +A A+G     A + L+++ K      L+ +EA  IA
Sbjct:    1 MSRAGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETITSLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMA---QVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAGGA-AVHACAVGKKQIEACAFLEKKQKNAPFHTLSQKEAAMIA 201          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB10_RAT (Proteasome subunit beta type-10 OS=Rattus norvegicus GN=Psmb10 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 50/167 (29.94%), Postives = 83/167 (49.70%), Query Frame = 3
Query:  153 AIKLGSTAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            A K G+T  GL  ++GV+L  + R T+  ++   S EKI  I   I C  +G+ AD       A  + + H  S G    V + T+ L     R+            G SL++ G D NGP LY   P G++ +    A+GSG + A + L+++++ ++TL+ A+ +
Sbjct:   35 ARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY--------QGHVGASLIVGGVDLNGPQLYSVHPHGSYSRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQEL 193          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 50/167 (29.94%), Postives = 82/167 (49.10%), Query Frame = 3
Query:  153 AIKLGSTAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            A K G+T  GL  ++GV+L  + R T+  ++   S EKI  I   I C  +G+ AD       A  + + H  S G    V + T+ L     R+            G SL++ G D NGP LY   P G++ +    A+GSG   A + L+++++ ++TL+ A+ +
Sbjct:   35 ARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY--------QGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQEL 193          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13
Identity = 49/167 (29.34%), Postives = 81/167 (48.50%), Query Frame = 3
Query:  153 AIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSV-EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETI 650
            A K G+T  GL  ++GV+L  + R T+  +    + EKI  I   I C  +G+ ADA      A    + H  S G    V + T+ L     R+            G SL++ G D  GP LY   P G++ +    A+GSG + A + L+++++ ++TL+ A+ +
Sbjct:   35 ARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRY--------QGYVGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQEL 193          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSA6_CAEEL5.478e-2232.11Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]
PSA6_YEAST3.551e-2132.78Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA3_CAEEL5.669e-1928.34Proteasome subunit alpha type-3 OS=Caenorhabditis ... [more]
PSMB_METTH1.263e-1832.32Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSMB_METTE6.930e-1731.52Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSA4_ENCCU1.544e-1634.66Probable proteasome subunit alpha type-4 OS=Enceph... [more]
PSA1_TRYBB2.633e-1626.34Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSB10_RAT3.219e-1429.94Proteasome subunit beta type-10 OS=Rattus norvegic... [more]
PSB10_MOUSE1.223e-1329.94Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB10_BOVIN2.725e-1329.34Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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