FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 52/164 (31.71%), Postives = 82/164 (50.00%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            G+T +G+  K+GVVLA ++R +   ++   +V KI +IDEH+  A +G + D   LV   R E + +    G+ M+V++    L ++          +   P+    L+ G DE  P LY  D  G   +      GSG E A S L  +YK +LTL+E   +A
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIM-------NGAKYFPYLAWFLVGGYDEK-PKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLA 165          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB10_HUMAN (Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 49/165 (29.70%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  153 AIKLGSTAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAE 644
            A K G+T  GL  ++GV+L  + R T+  ++   S EKI  I   I C  +G+ ADA         + + H  S G    V + T+ L     R+            G SL++ G D  GP LY   P G++ +    A+GSG + A + L+++++ ++TL+ A+
Sbjct:   35 ARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRY--------QGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQ 191          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 50/164 (30.49%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            G+T +GL  KEGVVLA + R +   ++   +V KI +IDEH+  A +G + D   LV   + E   ++ + G+ M+V++    L ++          S   P+    L+ G DE  P L+  D  G   + N  A GSG E A S L  +Y++++++ +   +A
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANIL-------NGSKYFPYLGWFLVGGYDEK-PRLFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLA 165          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.353e-12
Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            G+T +G+   +GVVLA ++R +   ++   +V KI +IDEH+  A +G + D   LV   R E + +    G+ M+V++    L ++          +   P+    L+ G DE  P LY  D  G   +    A GSG E A S L  +Y++DL ++E   IA
Sbjct:   10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANML-------NGARMLPYLAWFLVGGFDEK-PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIA 165          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 51/175 (29.14%), Postives = 91/175 (52.00%), Query Frame = 3
Query:  144 AIEAIK--LGSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            A+E +K   G+T +    KEGV++A + R +    +   SV+KI+EI+ ++   M+G  AD +    +  ++ + H  +    ++V   ++ L ++   +         R  G+S+  +IAG DE GP LYY D  G   + +  ++GSGS  A   L   YK D++++EA  +A
Sbjct:   48 AVEMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSY---------RGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKFDMSVEEASELA 213          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 42/164 (25.61%), Postives = 83/164 (50.61%), Query Frame = 3
Query:  150 EAIKLGSTAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            + ++ G+T +G+  K+ V++A E+R+T    +   + +K+ +ID + G  ++GL+ DA+ LV + + E + +R      M +E+    L ++         +    P+ V LL+ G D   P ++  D +G   +    + GSGS      L+ QY + +T+ E
Sbjct:    3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNML-------NQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDE 158          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB8_RAT (Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 48/166 (28.92%), Postives = 86/166 (51.81%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            G+T +  K + GV++AV+ R ++   +    V K++EI+ ++   MSG  AD +        E + +    GE ++V + ++ L ++ L++         R  G+S+  +I G D+ GP LYY D +GT       + GSG+  A   +   Y+QDL+ +EA  +A
Sbjct:   72 GTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQY---------RGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLA 228          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 48/163 (29.45%), Postives = 79/163 (48.47%), Query Frame = 3
Query:  156 IKLGSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            +K G+T +G+  K GVVL  + R T  P++   + EKI  I ++I C  +G  AD  +       + + H+ S G+   V +    L  +  ++              +L++ G D NGPSL+   P G+  Q     +GSGS  A +  + +YK D+T +EA
Sbjct:   31 MKTGTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKY--------QGHISAALILGGIDINGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYKNDMTKEEA 185          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB8_MOUSE (Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 47/162 (29.01%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            G+T +  K + GV++AV+ R T+   +    + K++EI+ ++   MSG  AD +        E + +    GE ++V + ++ L ++ L++         R  G+S+  +I G D+ GP LYY D +GT       + GSG+  A   +   Y+QDL+ +EA
Sbjct:   72 GTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQY---------RGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEA 224          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 53/180 (29.44%), Postives = 92/180 (51.11%), Query Frame = 3
Query:  129 FQVEYAIEAIK--LGSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            FQ E A++ +K   G+T +    K GV++A + R +    +   SV+KI+EI+ ++   M+G  AD +    +  ++ + H  +    ++V   ++ L ++   +         R  G+S+  +IAG DE GP LYY D  G   +    ++GSGS  A   L   YK D+T++EA  +A
Sbjct:   42 FQKE-AVQMVKPAKGTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNY---------RGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMRFSVGSGSPYAYGVLDNGYKYDMTVEEASELA 211          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSMB_PYRHO4.649e-1331.71Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSB10_HUMAN4.649e-1329.70Proteasome subunit beta type-10 OS=Homo sapiens GN... [more]
PSMB_PYRFU1.036e-1230.49Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_PYRAB1.353e-1231.10Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSB5B_ARATH3.935e-1229.14Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]
PSMB_THEAC5.140e-1225.61Proteasome subunit beta OS=Thermoplasma acidophilu... [more]
PSB8_RAT5.140e-1228.92Proteasome subunit beta type-8 OS=Rattus norvegicu... [more]
PSB7_DICDI5.140e-1229.45Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB8_MOUSE6.712e-1229.01Proteasome subunit beta type-8 OS=Mus musculus GN=... [more]
PSB5_SPIOL6.712e-1229.44Proteasome subunit beta type-5 OS=Spinacia olerace... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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