FC923112
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11 Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = 3 Query: 165 GSTAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641 G+T + K + GV++AV+ R ++ + V K++EI+ ++ MSG AD E + + GE ++V + ++ L ++ ++ R G+S+ +I G D+ GP LYY D +GT N + GSG+ A + Y+ DL+++EA Sbjct: 72 GTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQY---------RGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEA 224
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.551e-11 Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 3 Query: 165 GSTAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641 G+T + K + GV++AV+ R T+ + S V K++EI+ + MSG AD + E + + GE ++V + ++ L ++ ++ G + SM +I G D+ GP LYY D +GT N + GSGS A + Y+ L+ +EA Sbjct: 72 GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQY-RGMDLSMGS------MICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEA 224
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB5_SCHPO (Proteasome subunit beta type-5 OS=Schizosaccharomyces pombe GN=pts1 PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 44/166 (26.51%), Postives = 91/166 (54.82%), Query Frame = 3 Query: 165 GSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653 G+T + + + G+V+ V+ R ++ PL+ +V+K++EI+ ++ ++G AD + +E + H+ E ++V + ++ L ++ + + +G+S+ ++AG+ + G +LYY D GT + + ++GSGS A L Y+ DL+ QEA +A Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSY---------KGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLA 217
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11 Identity = 49/170 (28.82%), Postives = 80/170 (47.06%), Query Frame = 3 Query: 150 EAIKLGSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDP-SGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653 E I G+T +GL K+GVV+A EKR T + + +KI +I + + +G + DA+ L ++E + TV + +L + P+ V LLI G D G S+Y DP G + + A GSGS A L++++ ++ + EA +A Sbjct: 6 EKIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSY-------RYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELA 168
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11 Identity = 47/166 (28.31%), Postives = 85/166 (51.20%), Query Frame = 3 Query: 165 GSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653 G+T + K GV++A + R + + SV+KI+EI+ ++ M+G AD + + ++ + H + ++V ++ L ++ + R G+S+ +IAG DE GP LYY D G + + ++GSGS A L YK D++++EA +A Sbjct: 57 GTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSY---------RGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELA 213
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3) HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11 Identity = 47/170 (27.65%), Postives = 86/170 (50.59%), Query Frame = 3 Query: 165 GSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADA----RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653 G+T + K + GV++A + R T+ P + +V+K++EI+ ++ M+G AD R L R+ ++ E ++V + ++ L ++ ++ + G+S+ +I G D+ GP LYY D G A ++GSGS A + Y DL ++EA +A Sbjct: 59 GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNK----ERISVAAASKLLANMVYQY---------KGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAFGVMDRGYSYDLQVEEAYDLA 215
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_ENCCU (Probable proteasome subunit alpha type-3 OS=Encephalitozoon cuniculi GN=PRE10 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11 Identity = 52/177 (29.38%), Postives = 82/177 (46.33%), Query Frame = 3 Query: 108 FSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638 ++ G++ Q+ YA +A G T IG+K+K GVVL EK SPL S EKI +I IG +G+ +D + + +H+ ++ E T L D+ F G R G + L + + SL +TD SG A IG G+ + L++ +T++E Sbjct: 10 YTTTGQIDQLSYAQKAADSGDTCIGMKSKHGVVLLAEKPRVSPLYILESDEKIRKIGNTIGVVCTGMSSDTFYVGCAIKDYVFHHKENFNEDPTPGMMKVYLNDIFHYFTRGIN---LRVLGANTLTSVYKDGSFSLLHTDCSGKTLSYKAACIGKGTRRIKTELEKLDIDTMTIEE 183 The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 197
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bpback to top |