FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            G+T +  K + GV++AV+ R ++   +    V K++EI+ ++   MSG  AD          E + +    GE ++V + ++ L ++  ++         R  G+S+  +I G D+ GP LYY D +GT    N  + GSG+  A   +   Y+ DL+++EA
Sbjct:   72 GTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQY---------RGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEA 224          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.551e-11
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRITSP-LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            G+T +  K + GV++AV+ R T+   +  S V K++EI+  +   MSG  AD +        E + +    GE ++V + ++ L ++  ++  G + SM        +I G D+ GP LYY D +GT    N  + GSGS  A   +   Y+  L+ +EA
Sbjct:   72 GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQY-RGMDLSMGS------MICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEA 224          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB5_SCHPO (Proteasome subunit beta type-5 OS=Schizosaccharomyces pombe GN=pts1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 44/166 (26.51%), Postives = 91/166 (54.82%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            G+T +  + + G+V+ V+ R ++ PL+   +V+K++EI+ ++   ++G  AD +       +E + H+    E ++V + ++ L ++   +         + +G+S+  ++AG+ + G +LYY D  GT  + +  ++GSGS  A   L   Y+ DL+ QEA  +A
Sbjct:   61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSY---------KGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLA 217          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 49/170 (28.82%), Postives = 80/170 (47.06%), Query Frame = 3
Query:  150 EAIKLGSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDP-SGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            E I  G+T +GL  K+GVV+A EKR T    +   + +KI +I + +    +G + DA+ L    ++E   +        TV +      +L   +          P+ V LLI G D  G S+Y  DP  G   + +  A GSGS  A   L++++  ++ + EA  +A
Sbjct:    6 EKIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSY-------RYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELA 168          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 47/166 (28.31%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            G+T +    K GV++A + R +    +   SV+KI+EI+ ++   M+G  AD +    +  ++ + H  +    ++V   ++ L ++   +         R  G+S+  +IAG DE GP LYY D  G   + +  ++GSGS  A   L   YK D++++EA  +A
Sbjct:   57 GTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSY---------RGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELA 213          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 47/170 (27.65%), Postives = 86/170 (50.59%), Query Frame = 3
Query:  165 GSTAIGLKTKEGVVLAVEKRITS-PLLEPSSVEKIMEIDEHIGCAMSGLIADA----RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSL--LIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            G+T +  K + GV++A + R T+ P +   +V+K++EI+ ++   M+G  AD     R L    R+    ++    E ++V + ++ L ++  ++         +  G+S+  +I G D+ GP LYY D  G      A ++GSGS  A   +   Y  DL ++EA  +A
Sbjct:   59 GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNK----ERISVAAASKLLANMVYQY---------KGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAFGVMDRGYSYDLQVEEAYDLA 215          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_ENCCU (Probable proteasome subunit alpha type-3 OS=Encephalitozoon cuniculi GN=PRE10 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 52/177 (29.38%), Postives = 82/177 (46.33%), Query Frame = 3
Query:  108 FSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            ++  G++ Q+ YA +A   G T IG+K+K GVVL  EK   SPL    S EKI +I   IG   +G+ +D   +    +    +H+ ++ E  T       L D+   F  G      R  G + L +   +   SL +TD SG      A  IG G+    + L++     +T++E
Sbjct:   10 YTTTGQIDQLSYAQKAADSGDTCIGMKSKHGVVLLAEKPRVSPLYILESDEKIRKIGNTIGVVCTGMSSDTFYVGCAIKDYVFHHKENFNEDPTPGMMKVYLNDIFHYFTRGIN---LRVLGANTLTSVYKDGSFSLLHTDCSGKTLSYKAACIGKGTRRIKTELEKLDIDTMTIEE 183          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSB8_BOVIN1.495e-1128.40Proteasome subunit beta type-8 OS=Bos taurus GN=PS... [more]
PSB8_CANFA2.551e-1130.00Proteasome subunit beta type-8 OS=Canis familiaris... [more]
PSB5_SCHPO3.331e-1126.51Proteasome subunit beta type-5 OS=Schizosaccharomy... [more]
PSMB_ARCFU4.351e-1128.82Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSB5A_ARATH4.351e-1128.31Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSB5_RAT9.693e-1127.65Proteasome subunit beta type-5 OS=Rattus norvegicu... [more]
PSA3_ENCCU9.693e-1129.38Probable proteasome subunit alpha type-3 OS=Enceph... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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