FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig599 contig Ccv1_Contig599:22..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.885e-47
Identity = 98/194 (50.52%), Postives = 130/194 (67.01%), Query Frame = 3
Query:   72 LTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            L    YDR +  FSP+GRLFQVEYA EA+K G+T+IG+K  EG+VLAV+KR TS L+E +S+EKI +IDEHIG A SGL+ADAR LVE ARVE Q ++ +Y EP+ V+S ++ LCD+   +    +    RPFG +L+I G  +    L+ TDPSG   +  A AIGSG   A    ++QYK D+ L EA  +A
Sbjct:    4 LQNAGYDRAITVFSPDGRLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMY---TQNGGVRPFGSALIIGGVYDGICKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAINLA 194          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.921e-47
Identity = 94/189 (49.74%), Postives = 133/189 (70.37%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR +  FSPEGRL+QVEYA EA++ G+TA+G+K K+GVVLAV++RITS L++ SS+EKI +ID+HI  A SGL+ADAR L++ ARVE Q +R SYGE +TVE+  + +CD+   +        +RPFG++LLI G D +   L+ TDPSG   +  A AIGSG   A   L+E+Y +++++ E   +A
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAY---THHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGMELA 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.427e-47
Identity = 92/189 (48.68%), Postives = 129/189 (68.25%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR +  FSP+GRLFQVEYA EA+K G+T++G+K+KEG+VL V+KR TS L+EP S+EKI +IDEHIG A SGL+ADAR ++E AR+E Q +R +Y EP+ VES  + +CD+   +    +    RPFG +L+I G +  G  L+ TDPSG   +  A AIG+G   A    +++Y  D+ L +A  +A
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMY---TQHGGVRPFGTALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELA 194          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.427e-47
Identity = 93/189 (49.21%), Postives = 133/189 (70.37%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR +  FSPEGRL+QVEYA EA++ G+TA+G+K K+GVVLAV++RITS L++ SS+EKI +ID+HI  A SGL+ADAR L++ AR+E Q +R SYGE +TVE+  + +CD+   +    +   +RPFG++LLI G D +   L+ TDPSG   +  A AIGSG   A   L+ +Y +++T+ E   +A
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELA 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.393e-47
Identity = 93/189 (49.21%), Postives = 133/189 (70.37%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR +  FSPEGRL+QVEYA EA++ G+TA+G+K K+GVVLAV++RITS L++ SS+EKI +ID+HI  A SGL+ADAR L++ AR+E Q +R SYGE +TVE+  + +CD+   +    +   +RPFG++LLI G D +   L+ TDPSG   +  A AIGSG   A   L+ +Y +++T+ E   +A
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELA 195          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.096e-46
Identity = 98/189 (51.85%), Postives = 130/189 (68.78%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR +  FSP+GRLFQV YA EA+K G+TA+G+K KEGVVLAVEKRITS L+EPSS EKI +ID+HI  A SG+IADAR LV+ AR+E Q +R +YGEP+ +    + +CDL        +    RPFG +LL+AG ++  P LY TDPSG +++  A AIGSG   A +  ++ Y  DL ++ A  +A
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAH---TQYGGVRPFGAALLMAGVNDK-PELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLA 194          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.432e-46
Identity = 93/189 (49.21%), Postives = 131/189 (69.31%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR +  FSPEGRL+QVEYA EA++ G+TAIG+  K+GVVLAV++RITS L++  S+EKI +ID+H+  A SGL+ADAR L++ AR+E Q +R +YGE +++E   + +CD+   +    +    RPFGVSLLIAG D+N   L+ TDPSG   +  A AIGSG       L+++Y+ D+TL E   +A
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAY---TQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELA 194          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.870e-46
Identity = 98/189 (51.85%), Postives = 128/189 (67.72%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR +  FSP+GRLFQV YA EA+K G+TA+G+K  EGVVLAVEKRITS L+EP S EKI +ID+HI  A SG+IADAR LV  AR+E Q +R +YGEP  V    + +CDL        +    RPFG +LL+AG ++  P LY TDPSG ++   A AIGSG   A +  +E+Y+ D+ L++A  +A
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMH---TQYGGVRPFGAALLMAGINDR-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLA 194          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.870e-46
Identity = 94/185 (50.81%), Postives = 127/185 (68.65%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            YDR +  FSP+GRLFQVEYA EA+K G+TA+G+K  +GVVL V+KRITS L+E  S+EKI +ID+HIG A SGL+ADAR+LV+ ARVE Q +R SY EP+ VE  ++ +CD    +    +    RP+G +LLIAG D+N P L+ TDPSG   +  A AIG+G        + +Y+QD+ +  A
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTY---TQYGGVRPYGTALLIAGVDDNLPRLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQDMNMDAA 190          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.870e-46
Identity = 94/185 (50.81%), Postives = 126/185 (68.11%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            YDR +  FSP+GRLFQVEYA EA+K G+TA+G+K  +GVVL V+KRITS L+E  S+EKI +IDEHIG A SGL+ADAR+LV+ ARVE Q +R SY EP+ VE  ++ +CD    +    +    RP+G +LLIAG D+N P L+ TDPSG   +  A AIG+G        +  Y++D+ +  A
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTY---TQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAA 188          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSMA_METS32.885e-4750.52Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSMA_METVS4.921e-4749.74Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METTH6.427e-4748.68Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_METMP6.427e-4749.21Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM78.393e-4749.21Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_THEON1.096e-4651.85Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_METJA1.432e-4649.21Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_PYRFU1.870e-4651.85Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_METBF1.870e-4650.81Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METAC1.870e-4650.81Proteasome subunit alpha OS=Methanosarcina acetivo... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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