FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923113_ssr59 microsatellite FC923113_ssr59:59..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROM2 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=ndk PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.397e-40
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFIAIKPDGVQRG ++EII RFE+KGFKLV +K ++PSK+ AQ HY   +ERPFF  L +F+SSGPV+AMVWEGEGVI   RKLIGAT P ++EPGTIRGDLA+ +GR
Sbjct:    4 ERTFIAIKPDGVQRGYVAEIIGRFEKKGFKLVGLKQLIPSKDLAQNHYGVHRERPFFGDLVDFISSGPVVAMVWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGR 113          

HSP 2 Score: 22.3274 bits (46), Expect = 3.397e-40
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  672 KNIIHGSDG 698
            +NIIHGSDG
Sbjct:  113 RNIIHGSDG 121          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.427e-40
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K V PS++ A +HY   +ERPFF GL +F++SGPVIAMVWEG+GVI   RKLIGAT P  +EPGTIRGDLAV +GR
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGR 113          

HSP 2 Score: 21.9422 bits (45), Expect = 4.427e-40
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  672 KNIIHGSDG 698
            +N+IHGSDG
Sbjct:  113 RNVIHGSDG 121          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.631e-40
Identity = 76/110 (69.09%), Postives = 94/110 (85.45%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ER+FIAIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A++HY   KERPFF GL +F++SGPV+AMVWEG+GVIT  RK+IGAT P ++EPGTIRGDLA+ +GR
Sbjct:    4 ERSFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFGGLVDFITSGPVVAMVWEGDGVITSARKMIGATKPLEAEPGTIRGDLAINIGR 113          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.631e-40
Identity = 78/110 (70.91%), Postives = 93/110 (84.55%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFIAIKPDGVQRGLI EI+ RFERKGFKLV +K + PS+E A++HY   KERPFF GL +F++SGPV+AMVWEG+GVI   RKLIGAT P ++EPGTIRGDLA+ +GR
Sbjct:    4 ERTFIAIKPDGVQRGLIGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAINIGR 113          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROM4 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=ndk PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 9.792e-40
Identity = 74/110 (67.27%), Postives = 94/110 (85.45%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTF+AIKPDGVQRGL+ EI+SRFERKGFKL+A+K ++PS+  A++HY   +ERPFF GL +F++SGPVIAM+WEGEGVI   RKLIG+T P  ++PGTIRGDLA+ +GR
Sbjct:    4 ERTFLAIKPDGVQRGLVGEILSRFERKGFKLIALKQLIPSRALAEQHYGVHRERPFFKGLVDFITSGPVIAMIWEGEGVILGARKLIGSTKPLDADPGTIRGDLAIDIGR 113          

HSP 2 Score: 21.9422 bits (45), Expect = 9.792e-40
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  672 KNIIHGSDG 698
            +N+IHGSDG
Sbjct:  113 RNVIHGSDG 121          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 9.792e-40
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            +ERTF+AIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+E A +HY   +ERPFF GL +F++SGPV+AMVWEG+GVI   RKLIGAT P ++EPGTIRGDLAV +GR
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGR 113          

HSP 2 Score: 21.9422 bits (45), Expect = 9.792e-40
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  672 KNIIHGSDG 698
            +N+IHGSDG
Sbjct:  113 RNVIHGSDG 121          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROMP (Nucleoside diphosphate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndk PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 9.792e-40
Identity = 75/110 (68.18%), Postives = 92/110 (83.64%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTF+AIKPDGVQRG +S+II RFE+KGFKLV +K ++P+K+ AQ HY   +ERPFF  L EF+SSGPV+AM+WEGEGVI   RKLIGAT P ++EPGTIRGDLA+ +GR
Sbjct:    4 ERTFLAIKPDGVQRGYVSDIIGRFEKKGFKLVGLKQLIPTKQLAQDHYGVHRERPFFKDLVEFISSGPVVAMIWEGEGVILSARKLIGATKPLEAEPGTIRGDLAIDIGR 113          

HSP 2 Score: 22.3274 bits (46), Expect = 9.792e-40
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  672 KNIIHGSDG 698
            +NIIHGSDG
Sbjct:  113 RNIIHGSDG 121          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYNSC (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9605) GN=ndk PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.929e-39
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFIAIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+  A++HY   KERPFF GL +F++SGPV+AMVWEG+GVI   RKLIGAT P ++EPGTIRGDLAV +GR
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGR 112          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYNPX (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH8102) GN=ndk PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.929e-39
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTFIAIKPDGVQRGL+ EI+ RFERKGFKLV +K + PS+  A++HY   KERPFF GL +F++SGPV+AMVWEG+GVI   RKLIGAT P ++EPGTIRGDLAV +GR
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGR 112          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_PROM5 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=ndk PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.166e-39
Identity = 75/110 (68.18%), Postives = 91/110 (82.73%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            ERTF+AIKPDGVQRG I+EII RFE+KGFKLV +K ++PSK+ AQ HY   +ERPFF  L  F+SSGPV+AM+WEGEGVI   RK+IGAT P ++EPGTIRGDLA+ +GR
Sbjct:    4 ERTFLAIKPDGVQRGYIAEIIGRFEKKGFKLVGLKQLIPSKQLAQDHYGVHRERPFFKDLVNFISSGPVVAMIWEGEGVILSARKIIGATKPLEAEPGTIRGDLAIDIGR 113          

HSP 2 Score: 22.3274 bits (46), Expect = 2.166e-39
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  672 KNIIHGSDG 698
            +NIIHGSDG
Sbjct:  113 RNIIHGSDG 121          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PROM23.397e-4070.00Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMM4.427e-4070.27Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYNS36.631e-4069.09Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNPW6.631e-4070.91Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PROM49.792e-4067.27Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM39.792e-4068.47Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMP9.792e-4068.18Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYNSC1.929e-3970.00Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNPX1.929e-3970.00Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_PROM52.166e-3968.18Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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