FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STAAW (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MW2) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P ++ PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STAAU (Nucleoside diphosphate kinase OS=Staphylococcus aureus GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P ++ PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STAAT (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P ++ PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STAAS (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MSSA476) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P ++ PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STAAR (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain MRSA252) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P ++ PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STAAN (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain N315) GN=ndk PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P ++ PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STAAM (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ndk PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P ++ PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STAAE (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain Newman) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P ++ PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STAAC (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain COL) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P ++ PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111
[Close]
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_STAAB (Nucleoside diphosphate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ IKPD VQR LI E+ISR ERKG KLV  K++    E A+ HY + + +PF+N L  F++S PV AMV EGE  +   R +IG+T+P ++ PG+IRGDL + VGR
Sbjct:    1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGR 111
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STAAW9.931e-2853.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAU9.931e-2853.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAT9.931e-2853.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAS9.931e-2853.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAR9.931e-2853.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAN9.931e-2853.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAM9.931e-2853.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAE9.931e-2853.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAC9.931e-2853.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]
NDK_STAAB9.931e-2853.15Nucleoside diphosphate kinase OS=Staphylococcus au... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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